barSeed - Barley Seed Development Database

Probe CUST_18254_PI390587928

Source Contig U35_3368

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18254_PI390587928	Hv_44K_v2	GGACCATAAAAAACAATATGAGCAAAGATCATAAATGATATGCCCGCTCCCATGAGTGTA	1326	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.808	4.329	1.087	0.861	0.499	0.661
Raw	68.844	101.575	21.101	27.772	4.403	7.498

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12179.1	1465	2e-24	1333 - 1392	100	60 / 60	plus	ABC07987
JLOC1	JLOC1_8162.1	1615	8e-25	1438 - 1497	100	60 / 60	plus
Harvest21	ABC07987	1395	3e-25	1327 - 1386	100	60 / 60	plus	ABC07987
Harvest35	U35_3368	1395	3e-25	1327 - 1386	100	60 / 60	plus

Contig Sequence (1395 bp)

>U35_3368 1395 Hv_44K_v2
GAAACACCCAAGCACAGCGGGCGGCCCAGCTTCGCGACCACGATGAGGGCTCTCCCCATG
GCCGTCAGCCGCGCCGCCGTCGCCTGCGCCACCCCGGCCTCCGGCGGCGCCGTCCCCCGG
AGATCCATGCTCCTCTCCACGGCTGCCGCGGGCGCAGCGCTGCAGTCCGACCCCATCCGG
CTGACCGCGCCCAAGCTCAAGCTCCGCGCCTCCGCCGGGGCCGCGCAGGCCGCCGCCACC
TCCTTCTCCAGCAACGACGAGGCCTTCGCCTGGGCCAAGAAGGACAACAGGAGGCTCCTC
CACGTCGTCTACCGCGTCGGCGACATCGACAGGACCATCAAGTTCTACACCGAGTGCCTG
GGCATGAAGCTGCTGAGGAAGCGCGACATACCCGAGGAGAAGTACACCAATGCCTTCCTC
GGATACGGCCCCGAGGAATCCAACTTCGCCGTCGAGCTCACCTACAACTACGGGGTTGAC
TCGTACGATATCGGAGCGGGGTTCGGTCATTTCGGCATCGCAACCGATGATGTGGCGAAA
ACAGTTGAAATCGTAAGGGCCAAGGGAGGCAAGGTGACCAGGGAGCCTGGCCCTGTCAAG
GGTGGCAAGACCGTGATTGCGTTCATCGAAGACCCTGACGGCTACAAGTTCGAGATCCTA
GAGAGGCCGGGGACTCCAGAGCCACTATGCCAAGTGATGCTTCGCGTCGGTGATCTCGAC
CGAGCCATAAGCTTCTACGAGAAGGCTTGTGGTATGAAACTGCTCCGGAAGCGAGACAAC
CCTGAATACAAGTATACGGTGGCGATGATGGGGTACGGACCTGAAGACCAGAATGCCGTT
CTGGAGTTGACCTACAACTATGGTGTCACTGAATATGACAAAGGGAATGCCTATGCTCAG
ATCGCGATAGGCACCGATGATGTCTACAAGACCGCCGAGGTGGTGAAGCTGTCCGGAGGG
AAAGTGGTGCGGGAGGCAGGTCCCTTGCCCGGGCTCGGCACCAAGATCACAGCCATCCTA
GACCCTGATGGGTGGAAATCGGTGTTTGTTGACAACGTTGACTTTGCCAAAGAACTGGAG
TAACCATGTACAACTTTGACTTTGTGAAAGAACCGTCAACCTCAACGCTTTACCTTTTTA
CCATTTTTGTAAACATGAACGCATAGGCTTTGGGAGAATTTTTTATCTCTGAATAACGAC
ACATGGAGGAGAGGACAATGAGAGCCAACTCCAATTTTATGGATGTCATTTCCCATCAGG
AAGTTCAATTTTTATGGGAAATTTGAGCAAGTTTGAAATGTAAGCTCAGAAGAATGTGGT
TCGACCGGACCATAAAAAACAATATGAGCAAAGATCATAAATGATATGCCCGCTCCCATG
AGTGTAAAAAAAAAA

Homology of Contig U35_3368 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17920.1	378	0.0	protein\|glyoxalase family protein, putative, expressed
Brachypodium v1_2	Bradi3g10330.2	349	0.0
Arabidopsis v10	AT1G67280.1	350	5e-175	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein \| chr1:25188563-25190547 REVERSE LENGTH=350