barSeed - Barley Seed Development Database

Probe CUST_18251_PI390587928

Source Contig U35_3371

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18251_PI390587928	Hv_44K_v2	CCTGAAGGATTGGAAACCTTATGATTTTTTCCCACACTGTTTGTTTGATTTGTATGATTG	1970	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.189	3.373	1.373	0.598	0.619	0.699
Raw	36.227	59.328	21.381	13.701	3.681	5.795

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3371	2035	3e-25	1971 - 2030	100	60 / 60	plus

Contig Sequence (2035 bp)

>U35_3371 2035 Hv_44K_v2
GCTCTACTTCCAAGCATCCAGGGTTATGTTGATGCTGTTCTAGATTTAGCATCACATTTC
ATCACACGCTTGCGGCGTTATGCAAGCTTCTGCCGGACTTTGGCTAGCCATGCTGTAGGA
GCATCTTCTAGTTCAGGCAATTCGAGGAATATGGTTACTAGTCCAACCAACAATTCTCCG
TCACCGTCAAATAATCAAGGTAATCAAGGTGGAGTAGCATCTGCGACAGGGAGCTCACAA
ATGCAGGAGTGGGTCCAAGGTGCCATTGCTAAGATTAGCAACAATGCTGATGGCGCTGCC
AATGCCGCACCAAATCCAGTTAGTGGGAGGTCATCATTTATTCCTATAAGCATCAACACA
GGGACTTTTCCCGGGACACCTGCTGTCAGGCTTATTGGAGACTGCCATTTCCTTCATAGA
TTATGTCAATTGCTGCTATTTTGTTTGCTTTTCCGGAGGAGGCAATCACCAAGATTACTC
GCAAATGCACAGAGAAATCCTGATTCTGCCATGCAGAAAATACAGCACTTGATGAACAGT
AAGATAGAGGACAGTAGTTCTGCTATTTCTGCTGTAAGATCTGGTCTAGGGGCTGCCAAA
GTGGAAGATGGTGCAGCTACACGTGGACAGTTGGTTCTTGGAGCAAAGGGTCTTGAAGAA
AATCCAATGGGAAAATCTGTTAGAATTGGTTCTGGCAATGCTGGCCAGGGCTACACATCG
GATGAGGTGAAGGTTCTATTTCTCATATTGGTTGACCTTTGTCGAAGGACATCAGGCTTG
CAACACCCATTGCCTGTTTCTCAGGTTGGCACTAGCAACATAATTATAAGGCTGCACTTC
ATCGACGGCACTTACACTGTGCTCCCTGAGGTAGTGGAAGCATCTCTTGGTCCCCATATG
CAGAACATGCCGCGTCCACGGGGAGCTGATGCTGCTGGTCTTTTACTTCGAGAATTGGAA
CTACAACCTCCTTCTGAAGAATGGCATAGGCGCAACATGTTTGGAGGGCCCTGGTCAGAA
CCAGATGATCTCGGTCCATTGGATAATATGCCACATCTGAAAATAGGTGGTCATATCAAC
CCACACGCGTCTGACATGGAAGAGGAGGGTAAAACTAACTTTGGGATTCAAAGTCTTTGG
CCAAGAAAGCGCCGGTTGTCTGAAAGAGATGCAGCATTTGGTCTGAAAACATCTGTAGGT
CTTGGAGCTTATCTTGGCGTAATGGGGTCTCGACGAGATGTCATTACAGCCGTGTGGAAA
ACAGGACTTGATGGTGAATGGTATAAGTGCATACGATGTTTACGGCAAACTTGTGCATTT
GCACAGCCTGGTGCCGCAAACATGGCAAATGAACGCGAGGCGTGGTGGATCAGCCGGTGG
ACCCAAGCATGTCCAATGTGTGGTGGGTCATGGGTGAAAGTTGTGTGATCGCTGTCTTCC
GTGACTACTTCACCATGCTAATTCTTCTATAGTAGTTGCTGCTTGGCCAAATCTGAACGA
GCATTGTTGGTTACCATGTTGGATAATTTTGTGCCCAACAATTAGATCATCAGTCTCATG
CCCCAGCGCTTTGGCTTTTACCTCCAGAGGTCAAAAGCTTAAAGCAGATACTGAGACTTG
GCTCTAACGGCTATGTAAAAGTATAGTAATATTAGGGGAGATGGCAATGTTTGCATTGTG
CGTTTCTTATGTGTATAAATGTATCACAATGTTCGAACAAAGCTGTTAGATACACATATT
GCTAGTGATGGATGTAGCTAAATTGCTAGCGATGTGAAATGATGATTTACCCCTCATCTT
TAGGTGAGTTCAGCTATTTTGATAAAAACAAACTCTGCACACCATGTAAATTTATGTGAA
TGTTATGTTCTGTTAGATGAGATGGAAGCTGCAGTTGTCACTACCTAGTTCCTTGGCATC
GTATGTTCTTGGATCCTTTGATTCAAAGGATTTTTGTAGGAATTTTGAATCCTGAAGGAT
TGGAAACCTTATGATTTTTTCCCACACTGTTTGTTTGATTTGTATGATTGAATCC

Homology of Contig U35_3371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35560.2	1302	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g29990.1	1306	0.0
Arabidopsis v10	AT4G04920.1	1278	4e-152	\| Symbols: SFR6 \| sensitive to freezing 6 \| chr4:2497931-2504996 FORWARD LENGTH=1278