barSeed - Barley Seed Development Database

Probe CUST_18250_PI390587928

Source Contig U35_19249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18250_PI390587928	Hv_44K_v2	ATGCATGGCTGCGGCAAAACGAAGCTGTAAAACTCCTTGTGAAACTGTAAAATGGCTCAC	877	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.016	3.657	0.883	0.857	0.772	1.111
Raw	147.511	221.996	43.999	65.541	21.089	33.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68598.1	3251	6e-24	2428 - 2486	100	59 / 59	plus	ABC12444
MLOC	MLOC_68598.5	1252	6e-24	837 - 895	100	59 / 59	plus	ABC12444
MLOC	MLOC_68598.4	2161	6e-24	2044 - 2102	100	59 / 59	plus	ABC12444
MLOC	MLOC_68598.2	2944	6e-24	2169 - 2227	100	59 / 59	plus	ABC12444
JLOC1	JLOC1_45396.2	3025	3e-24	2199 - 2257	100	59 / 59	plus
JLOC1	JLOC1_45396.1	3053	3e-24	2199 - 2257	100	59 / 59	plus
Harvest21	ABC12444	1056	3e-25	875 - 934	100	60 / 60	plus	ABC12444
Harvest35	U35_19249	1053	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (1053 bp)

>U35_19249 1053 Hv_44K_v2
GAAGCGAGGGCTGCGGCGTTGCCCCAGAGATTGCAACCGGAAGCAAGGGCTGCGGCGTTA
CCCCAGAGATTGCAATCGGAAGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACGGCG
ACGACCTCGTCTGTCTGCTCCGACAACGGTGAGCGGAGCCAGCTGAAGAGGAGCAGCCAC
CAGACTCTGGAGTGGTCGGTCAGTCAGGACGACGAGGATCTTGACGACGAGGCCGGCGGG
CTGAGAAAGTCGGCGGCGAGGAGCACCAAGCGCGGCCGGACCGCCGAAGTGCACAACATG
TCGGAGAGGAGGAGAAGGGATCGGATCAACGAGAAGATGCGCGCCCTGCAAGAACTCATC
CCCAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAG
ACCCTGCAGCTCCAGGTCCAGATGATGTCGACGATGGGGACGGCCGGGATGTGCATGCCG
CCGATGCTGGCAATGCAGCACATGCAGATGCCCCCGATGGCGCACTTCCACCACCACCAC
CTCGGCGCCATGGGGTTCGGCATGGGCCCCTTCGACCCGCGCCTCGTCGCCGCCGCTGGC
GCCGCGCAGTTCCCTTACCAGATGATCCCCGGCGCGCCCATGTTCGGCGGCCACGCGATG
CCTGCTCCGCCACCGTTCCACCAGGCGGCGGGCGCTCACATGGCCGCCGGCCCCGTCACC
AACGACGCCCCCGCAGCGCAGGCCGAGCAGGCACCGGGCGACCATCCGCAGGTCCCACGA
ACAATGTAGCCTAGCTCCAACGGCGGCGGAGGTCGATCTGACTTTGTAGCAAGCTAGCGG
CGCACGCAGCAAGGCTCGGTGGTAACTCCGAGCATGCATGCATGGCTGCGGCAAAACGAA
GCTGTAAAACTCCTTGTGAAACTGTAAAATGGCTCACGGACTGCTCCGGCATCTTCCCTG
TGTCAGAGGATAGGACGGGGTACAGTGTCTGCTGGAGAGGATCAATGGATCAGGATCGCT
TCTGCTTCCCGCTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g04740.1	506	2e-56	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g36740.1	495	6e-66
Arabidopsis v10	None