barSeed - Barley Seed Development Database

Probe CUST_18247_PI390587928

Source Contig U35_45516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18247_PI390587928	Hv_44K_v2	GCATGTTAGGCTCTCTGATCATGTGGAAGCTTTGTTATATGTTACTGATGATATACATCA	36	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.194	0.591	1.377	2.013	1.037	1.113
Raw	1033.289	4897.433	9968.977	22540.057	4079.147	4756.710

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57001.1	5510	2e-24	25 - 84	100	60 / 60	minus	ABC10722 ABC44512
JLOC1	JLOC1_36896.2	5827	8e-25	5725 - 5784	100	60 / 60	plus
JLOC1	JLOC1_36896.1	5515	8e-25	5413 - 5472	100	60 / 60	plus
Harvest21	ABC44512	634	3e-25	37 - 96	100	60 / 60	minus	ABC44512
Harvest35	U35_45516	634	3e-25	37 - 96	100	60 / 60	minus

Contig Sequence (634 bp)

>U35_45516 634 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCGCAAATGTAAATATCATTGATGTATATCATCAGTAACATAT
AACAAAGCTTCCACATGATCAGAGAGCCTAACATGCACATTAATTTTCACAAGATGAGAG
AATTTACAAAGCTACTCACAAAACGTCACTGCGGTTCTTATCTCGGCGATGCGCTTAACC
ATTTCCAGGTGCAGGGAAGGAAAAGGAAAATTTTAACAATACATACATAAAAGTCTTCCC
AATGCACTCATCCATTTCTGCTTTGTTCCCCCAGGTGGAGGAGGCAAGAGGATCCTCAGC
TATGTATGACTGTAAACCTGCAGTCGATCCCACAACGCGCTTTGAACTAACTGAAGATGA
AACTAGCTGGAGCAAGAGGATCTGCACAGCCCTGTATTAGTCGATCCCATAACGGTTTGT
TCTTGCCGTTGGTTGGTTCAGTTGGGTGTCAAAATTTTCGAGCGGCATGATACAATTCAA
TGTAGTCCAGCGCGGGCCGGTTCCATGACCAGTCTTGCTCCATGACCCTCTTAACAGGGA
GTGGAACCAATCACGGGCATCGAACCAAGCGGCGATTGCTCTGTTAAGCGCATAATCCAC
GCCGTTGCTGTCGGCTCCGTCGAAACTGAACCCA

Homology of Contig U35_45516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None