barSeed - Barley Seed Development Database

Probe CUST_18246_PI390587928

Source Contig U35_45517

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18246_PI390587928	Hv_44K_v2	CCAAAACTGCTAGAAGAATTTGATACCAAGAAAGTAAGCTGGAATCCGCACAAACACTGT	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373676	1785	2e-24	524 - 583	100	60 / 60	plus	ABC17434
MLOC	MLOC_5580.2	1003	2e-24	943 - 1002	100	60 / 60	minus	None
MLOC	MLOC_5580.1	1422	2e-24	1219 - 1278	100	60 / 60	minus	ABC17434
JLOC1	JLOC1_3596.1	1458	8e-25	86 - 145	100	60 / 60	plus
Harvest21	ABC44515	611	3e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC12719	1117	3e-25	495 - 554	100	60 / 60	plus
Harvest35	U35_45517	611	3e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_20592	1117	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_45517 611 Hv_44K_v2
CGGCCGCCTCGGTCATGGCCACTCGCCGCGCCACTCCGCCGGCCTCTGCCCCCTGCCGTG
CTGCTTCTGTCTGCTTATCAATTGAATTTTGGACCCCATTTCGAATTGGGAAGCCGAGCG
CCCCCAAGGCCCCAACCCTAGGCAAGGGAACCCGCCGGCCGCGACGATGCCGAGCTTCCC
TCCGCCGGGCGGCGTCACCGTCTGCGAGATCAACCGCGACCTCGGTACGTACCCCCACAA
CCAGCTCCCTCTTGCTCCTGCCGCTTGCTTGCAACCCCCCCAAAACAACCACTCACACCA
CTAATCGAGTGCGCATTTGGCATTGACTCGTAGTTGTGGCGGACTCCCTCTCGGAGGAAC
GCGCCAAGGAGGCCTACGGGGATGTCCTGGGGATGGTGTTCAGCCCAATTCCTTTCCAGC
CGGATGATCTCCTAGCGAAGCACGAGGCTCCTGCTCCAGACGAAGCTGAGCCCACTGAGT
GTATCCCCAGGACAAGTTTGGTGTCCACCATAGCCGAGTCCTTCAAGCAAATGCTCTTCC
CTTCTTGCAATCCAAAACTGCTAGAAGAATTTGATACCAAGAAAGTAAGCTGGAATCCGC
ACAAACACTGT

Homology of Contig U35_45517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None