barSeed - Barley Seed Development Database

Probe CUST_18244_PI390587928

Source Contig U35_21561

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18244_PI390587928	Hv_44K_v2	GTTCTTTTATGCTACAGTTGTAGTGCATATTATTTCCTCTTGAGCAGTTCTCGCCGTAAA	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61713.1	2581	6e-24	2498 - 2556	100	59 / 59	plus	ABC20523
JLOC1	JLOC1_40340.2	2469	3e-24	2306 - 2364	100	59 / 59	plus
JLOC1	JLOC1_40340.1	2611	3e-24	2448 - 2506	100	59 / 59	plus
Harvest21	ABC20523	603	3e-25	15 - 74	100	60 / 60	minus	ABC20523
Harvest35	U35_21561	680	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_21561 680 Hv_44K_v2
ATGGATCAGAGAGCAGCCTTGGTTTCAAGGAGGAAAACAAGTGCCAACGCACCAACTTCC
TGTTTGACTGCATCGTCGAGTCGCTGGACTCGAAGTTCCGTGATTTCGGCAAATGCGGGT
ACAAGGCTTTGTTGCGAACACCTCTCACCCTGAGCAAGGACCTGCTGAAGAGGGAGATAT
CTGAAGAGATCGGCAGCTGGAGCGAGATGTCGTCGGACCGGGCCACCGCGGAGAAGGAGC
TGGAGCAGGTTGTGGCAGCAAGGTGGGACCCGTGCCGGACCGAGGCGTTCGACATCAGCG
TTGCCATCGAGGGCGACATACTCGAGGCCATCGTCGGCGAGTTCGCCTTCGACCAATGCT
GCCGCTGAAGGTGTGCAAGTGTACTGGCTGGCATGACATTGGCCACTTTACAAGTAAACA
CTCTGCAGATATGTACTGTGTTTTCTCCGTGGAAGGTTTTGTACAGCGTCATGTAGTAAT
ATATGGACGCCCCCACCCCTGGTTATTTTCCCTTTTGTGTAGTACTGCTGCTAAAAGTTC
ATGCACCGTTTTCTTTTCTTTTACCCTCGGGAGGCATTTGCTGCCCTTTTCACTGAATAA
TGCAAGGTTCTTTTATGCTACAGTTGTAGTGCATATTATTTCCTCTTGAGCAGTTCTCGC
CGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None