barSeed - Barley Seed Development Database

Probe CUST_18243_PI390587928

Source Contig U35_21562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18243_PI390587928	Hv_44K_v2	GGAGACAAAACATTGTACTCTTATGCTATGTATGAACATAAATGGACTCAGGTCAGCATA	19	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.175	0.341	1.591	2.198	1.089	1.174
Raw	26.114	79.762	326.044	682.068	121.609	143.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76375.1	338	2e-24	242 - 301	100	60 / 60	plus	ABC17917
JLOC1	JLOC1_50931.1	680	8e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_21562	681	3e-25	20 - 79	100	60 / 60	minus

Contig Sequence (681 bp)

>U35_21562 681 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATATGCTGACCTGAGTCCATTTATGTTCATACATAGCATAAG
AGTACAATGTTTTGTCTCCTACAACAACAAAATTACAGTGATTAACCTGCACCTTTAAGT
CACAAGTCACAGACTACAGATACAAATAGTAAACGAAAATAGTGGGATTGATCCCAAGTT
CTCAGTTCCTCGCCATGTTCATGTTATCTACAGGACATCCAATCATCCAATTGGAATGAT
CAGAAAAAGATCATAGCACAGAGGCTACGCTAGAACGGAACACTGACTGACTCTGCATCA
GACAAGTTAACAAAAGCCACCTTTTTCAGGCGCTGCCAGGAGCGGGAGGCGAAGGCAAGG
GGATGACCCGGGTGTTCTTCCCCACCACGATGGTGATGTACCCGCCGTCCTCGTCGGCCG
CCGGCGATGGCGAAGGCGACCCCCGCGCCCTCTTCGCCTCCTCGGCCAGCGCCCGCCGGT
ACAGCTTCTCCTCCGCATCCTTCAAGAACTGGAGCTTGGGCGGCGGTGACGCCGCCACCG
GGGCTGGGCTCGCCGCCGGGGACTCGAACAGGGGGTTGTACGACTTTTCCATGGCCGGCG
GGAGGGGCGAGGACGAGGGCGTGAGGAACGGCGTCTCGGAGCAATGGAGCAGGTCACCCA
GGTCAAGGCTCCTCCCGCACT

Homology of Contig U35_21562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None