barSeed - Barley Seed Development Database

Probe CUST_18240_PI390587928

Source Contig U35_21565

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18240_PI390587928	Hv_44K_v2	TGGTTGGTGATCAGATACTTTGTTTACATATATGCATTTGATACAGAATGCAATGGGCAA	1035	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52024.3	4429	2e-24	4309 - 4368	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_52024.4	2409	2e-24	1 - 60	100	60 / 60	minus	ABC15906 ABC15907
MLOC	MLOC_52024.2	6718	2e-24	121 - 180	100	60 / 60	minus	ABC14159 ABC15906 ABC15907
MLOC	MLOC_52024.1	6178	2e-24	267 - 326	100	60 / 60	minus	ABC15906 ABC15907
JLOC1	JLOC1_33277.2	2311	8e-25	2127 - 2186	100	60 / 60	plus
JLOC1	JLOC1_33277.1	1790	8e-25	1606 - 1665	100	60 / 60	plus
Harvest35	U35_21565	1139	3e-25	1036 - 1095	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_21565 1139 Hv_44K_v2
GCTCCAGTAATTCATTATATTTGCAAGAACCTAACATGCTTGAACCTTAGCTATGCTCCA
ACGTTTCAGACAGCTGATCTTATTGGAGCTATTCGCCATTGTCAGAATCTCCGACACTTG
TGGGTACTAGATCACATTGGCGATGCAGGATTGAAGGTTGTAGCCTCTTGTTGCCTGGAG
CTGCAAGAGTTGAGGGTATTTCCTGCAAATGCAGATGTGTTAGCAAGCACTGATGTGACA
GAGGAAGGGCTGGTTGCAGTATCTTCAGGCTGTCGGAAGCTAAGCTCTGTTCTCTATTCC
TGCAGCCGAATGACTAATTCTGCTCTGATTACGGTGGCAAAGAATTGCTCGCGAATCACA
TCCTTCAGACTGCGTATCTGCTTGCATGGGTCAGTGGATGCCGTGACAGGCCAGCCACTG
GATGAGGGTTTTGGGGCAATTGTCCGGTCATGCAAGGGCCTCAGGCGTCTATCTATGTCT
GGCCTTCTCACGGACAGCGTGTTCCTGTACATCGGCATGTACGCTGAGAGGCTGGAGACG
CTCTCTGTTGCGTTTGCAGGAGATAGTGATGATGGCATGATCTACGTGCTCAATGGCTGC
AAGAATCTGAGGAAGCTGGAGATGAGAAACTGCCCGTTTGGCGACACGGCGCTTCTTGCA
GGCATGCACAGGTACGAGGCGATGCGCTCTCTTTGGATGTCGTCGTGCGACATCACCCTG
GGTGGCTGCAGGTCCCTCGCGGCAACCATGCCAAACCTAAACGTCGAGGTCGTCAGCCAG
GTGGATGGAGTCTCGTGCGATGCAAAGAAGGTGGAGAAGCTGTATGTCTACAGGACACTC
GCCGGGCCGAGGGGTGATGCCCCTGGATTCGTCTCGGCACTGTAAATTACCTGTACTATC
GTGGTTAGTCGGTTTCTGTGTGGCTTGTAATTTTTTTACGGTGACTTAACCGTGGAGGAA
CCTGCGCGTGCTCAAGACTAGAGTTTCGATCATCCTGCTATTTCACTTACCAAGTCGATG
GAAGCAGTGTATGCTTGGTTGGTGATCAGATACTTTGTTTACATATATGCATTTGATACA
GAATGCAATGGGCAATCAAGTTAAAATGTGGTATTTGTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g31620.1	569	1e-146	protein\|OsFBL55 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi4g18220.1	577	1e-160
Arabidopsis v10	AT3G26810.1	575	1e-117	\| Symbols: AFB2 \| auxin signaling F-box 2 \| chr3:9868342-9870464 FORWARD LENGTH=575