barSeed - Barley Seed Development Database

Probe CUST_18239_PI390587928

Source Contig U35_21566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18239_PI390587928	Hv_44K_v2	GTGTAGCTAACACGGCATAATGTATGGATCTGGTGTATTCTAAGTTTTATTTATGTGGTT	851	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368181	2040	2e-24	1965 - 2024	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_40251.1	1777	2e-24	649 - 708	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_40251.2	1984	2e-24	646 - 705	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_40251.3	1898	2e-24	646 - 705	100	60 / 60	plus	ABC15906 ABC15907
JLOC1	JLOC1_26305.1	986	8e-25	646 - 705	100	60 / 60	plus
Harvest21	ABC15906	944	3e-25	852 - 911	100	60 / 60	plus	ABC15906
Harvest35	U35_21566	944	3e-25	852 - 911	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_21566 944 Hv_44K_v2
ATCACATTGGCGATGCAGGATTGAAGGTTGTAGCCTCTTGTTGCCTGGAGCTGCAAGAGT
TGAGGGTATTCCTGCAAATGCAGATGTGTTAGCAAGCACTGATGTGACAGAGGAAGGGCT
GGTTGCAGTATCTTCAGGCTGTCGGAAGCTAAGCTCCGTTCTCTATTCCTGCAGCCGAAT
GACTAATTCTGCTCTGATTACGGTGGCAAAGAATTGCTCGCGAATCACGTCCTTCAGACT
GCGGATCTGCCTGCATGGGTGAGTAGATGCGGTGATAGGCCAGCCACTGGACGAGGGTTT
CGGGGCAATCGTCCGGTCATGCAAGGGCCTCATGCGTCTATCTATGTCCGGCCTTCTCAC
GGACAGCGTGTTCCTGTACATCGGCATGTACGCGGAGAGGCTGGAGACGCTCTCTGTCGC
GTTTGCAGGAGATAGTGATGATGGCATGATCTACGTGCTCAACGGCTGCAAGAATCTGAG
GAAGCTGGAGATGAGGAACTGCTCATTTGGCGACACGGCGCTTCTTGCAGGCATGCACAG
GTACGAGGCGATGGGCTCTATCTGGATGTCATCGTGCGACATCACCCTGGGTGGTTGCAG
GTCCCTCGCGGCAACCATGCCAAACCTCAACGTCGAGGTCGTCAGCCAGGCGGATGGAGG
CGCTTGTGATGCAAAGAAGGTGGAAAAGCTGTATATCTACAGGACACTCGCCGGGCCGAG
GGGTGATGCCCCTGGATTCGTCTCGGCACTGTAAATTACATCTACTCTCTACTACTCCAT
GTCCTACTTTGAAGCGGGCACCACCTCTGTAAATTTTGGTTTGTCTTCTGAACTGCAAAT
CTTTGCCGCGAGTGTAGCTAACACGGCATAATGTATGGATCTGGTGTATTCTAAGTTTTA
TTTATGTGGTTTTCATATATTAGTAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g31620.1	569	5e-109	protein\|OsFBL55 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi4g18220.1	577	2e-115
Arabidopsis v10	AT3G26810.1	575	7e-85	\| Symbols: AFB2 \| auxin signaling F-box 2 \| chr3:9868342-9870464 FORWARD LENGTH=575