barSeed - Barley Seed Development Database

Probe CUST_18238_PI390587928

Source Contig U35_21567

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18238_PI390587928	Hv_44K_v2	GGTCAGCTCATGAGTTTCGGTATATTACCTAGCATTGCAGAAGGAGCAATCAAAGACGGA	1072	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.536	1.110	1.106	0.965	0.401	0.383
Raw	1157.973	1282.070	1144.653	1561.590	231.225	238.431

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_21567	1284	3e-25	1073 - 1132	100	60 / 60	plus

Contig Sequence (1284 bp)

>U35_21567 1284 Hv_44K_v2
AGGAGGCCCTTGGCATGCAGTGGAAGCAACTAAACTGTATGACAGACTGCCGCTACTACT
GCATGATGCAAAGAGAAGAGGAACGGCGATTAGGTGGCCTGAGCCCTGTTCAGTATCATG
GAAAATGGCCCTTCAAACGTGTTTCTGTCTTCCAGGAGCCCCTTTCGGCTGCACTGTCTG
TTCTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTCTTCCTGCTAGTGAAATACA
AATTACCTCTTAGACCTCAGACCAAGAGGACGTACTACGAATACACTGGCTTATGGCATA
TCTATGCAATATTATCAATTAATGCATGGATCTGGAGCTCTGTATTCCATACCAGGGATA
TCGACTTGACTGAGAAATTGGATTACTCTTCAGCTGTGGCCGTACTTGGCTACTCTTTAA
TCCTTACATTGCTAAGAATTTTTAATGTCAAGGATGCGGCTGCCAGGGTGATGTTTGCTG
CACCTATTCTAGCATTCGTCACAACACACATCTTGTATCTTAACTTCTATGAGCTTGACT
ACGGATGGAACATGAAAGTTTGTGTGGCGATGGGTGTGGTTCAAATTGTCGCATGGGCAA
CCTGGGCTGGCGTGACCCGTCATCCGTCACGATTCAAGCTTTGGGTCGTTGTGTTTGGAG
GAGCTCTAGCTATGCTTCTTGAAGTGTTTGACTTTCCTCCGTACAAGGGGTATGCCGACG
CGCACTCGTTGTGGCACGCGAGCACGGTTCCCCTCACCTACCTTTGGTGGAGCTTCATTA
AAGATGATGCAGAATTCCGCACCTCCACACTCACACTTGTTAAGAAGGCCAGGTAAACTA
AAAGGCCATTATGTTGTTCGGTCCTCTCAAGGTAACACAAGCAAAAGCTCGGGTATTCCC
TGGAACCGCAAATCGTTCGTCTTTGAGCGTCACGGTTTTGGTCTGCAAACTCAGCATCTT
GTTTCTGCGGTTCTTGCCCTCCTCCCGACTTGTGTTTTGATTGATGTATGTATGAAGAAT
TGTTTTGTAGTAGAAAAAGAGACATTTATCTTTTTTCCATGCCCGTTGAAACGGTCAGCT
CATGAGTTTCGGTATATTACCTAGCATTGCAGAAGGAGCAATCAAAGACGGAGGGGCTGT
TTGGTTTCCAGCCTAAGGTTGCCACGCTTAACCTTAGTCATGCCACAATACCTTAGGCAT
GTGTTTGGTTCATTGCCACACTTGTGGCTTACCATACTTTTCTAATTATATGGTCCACGT
GTCATACACTTAATTTTTAAAAAA

Homology of Contig U35_21567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g13330.1	350	0.0	protein\|per1-like family protein, putative, expressed
Brachypodium v1_2	Bradi1g15970.1	349	6e-177
Arabidopsis v10	AT1G16560.1	342	3e-142	Per1-like family protein \| chr1:5668945-5670343 FORWARD LENGTH=342