barSeed - Barley Seed Development Database

Probe CUST_18233_PI390587928

Source Contig U35_19251

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18233_PI390587928	Hv_44K_v2	AATTTCCTCAAGATGCTAATACAGAAGACCCTCAAGGATAGAGAGGAGTCCAACCTGGAA	1153	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.532	0.864	2.101	2.103	1.014	0.697
Raw	22.066	54.627	119.744	187.580	31.676	24.514

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250639.1	2190	2e-24	1425 - 1484	100	60 / 60	plus	ABC21325
MLOC	MLOC_64799.1	2311	2e-24	1552 - 1611	100	60 / 60	plus	ABC21325
JLOC1	JLOC1_42587.2	2583	8e-25	1703 - 1762	100	60 / 60	plus
JLOC1	JLOC1_42587.1	2429	8e-25	1549 - 1608	100	60 / 60	plus
Harvest21	ABC16132	785	3e-25	716 - 775	100	60 / 60	plus
Harvest35	U35_19251	1879	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1879 bp)

>U35_19251 1879 Hv_44K_v2
CAGCAGAGCAGAAATCAATCCTAAATTAGCGTCCCGCCACCAAGAACTCCACTACCAGGA
TCCAATCATCCCAGGCATTTGGCCCACTCCACCACCACCACCCAGGAAATCCCAAGAAAG
CTCGCACCGCCGGGCCAAATCGGCCCTACGCCGCACCAGATTACTGGCCGCACCGTAATA
ATTCCCTGAGAAGAAGAAGGGGAGCTCGGGCGGAAAAGCAATGACGGAGGTGGCGCTGTT
CCGGGGCCCGACCAACCTCGCTTCGCCCGCAAGCCGCGGCTCCTCCTCCTCCTCCTCCAC
CTCCCTGCGCTATACAGCCGATAGCGACGTGCTCCAGAGAGGCACCACCAGCAGCGCCCA
GGGCCCTGCAGGATCCGCGGAGCGACAGGTGGAAGGATCGGAGGAGGAGGAGGAGCGCTG
GTCCTTCTTGGCGCTGCTTCTCGAGCTGCTAAGGAAGTCGCTGCTCCGGTGTAGGGCGGA
GGACGGCGGCGAAGGCCACGCCCAGGGCGGGATGGAGATTGGGCTGCCCACGGATGTGCA
GCACGTGGCGCACGTCACGTTCGACAGGTTCCATGGATTCCTCGGGCTTCCCGTCGAGTT
CGAGCCCGAGGTGCCCCGCCGCGCTCCCAGTGCCAGTGCTAGTGTCTTTGGCGTTTCAAC
ACAATCAATGCAGTGTTCATATGATTCCAGAGGAAACAGTGTTCCAACGATTCTCTTGAT
GATGCAAAGACGTCTTTATGAACAAGGCGGTCTTCGGGCAGAAGGTATTTTTCGTATAAA
TGCGGAGAATAGCCAGGAAGAGTTTGTGCGAGATCACTTAAATAGTGGATCTGTGCCGGA
TGGCATTGATGTTCACTGTTTGGCGGGTCTAATCAAAGCCTGGTTTAGGGAACTGCCGAG
TGGGGTGCTGGATTCTATCCCACCTGAACAGGTGATGCAGTGCCAATCTGAAGAGGACTG
TGCTCGGGTTGCCAAATGCCTTCCACCAACTGAATCAGCCTTACTTGACTGGGCTGTTAA
TTTGATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAGCGATCGCAATGTTGC
TATGGTTTTCGCACCAAATATGACCCAGATGGCAGACCCTTTGACTGCACTCATGTATGC
GGTGCAAGTGATGAATTTCCTCAAGATGCTAATACAGAAGACCCTCAAGGATAGAGAGGA
GTCCAACCTGGAAGAAGCCTCTTTGCCACAGAAGGACCCATCTGACGAAAACGGCCATCA
GAACCCCAGTCTCCCCGTTAATCCTCAACCTGAAGAAATATCCAGGCGCCCCTCTTTCGT
CAGCGAGGAGCCCCTTGTGTACAGTCCTACACACAGTGCTGAAGACAAGCCTCCTGCGGA
AGGCGATTCCATAGCTTCCATTGTCCAGACAAGCAATATTCGGTCAAGCGTGGAGGGCTC
CCCTAGTTGCTCGCAGGCCGCTATTGCCGCTTCGTCGGCCATTGCTGATGCTTCCTGTGC
TACAGCAGCCAACTTACTTCCAAGCAGAGGGAACCGAAGCATGAATAGCAGGAGGACTAG
AAAGGGCAAGCGGCAGTGCGGAACGCCCACCGCTCCTCCAGCTGAGAAATCGAGGGGCGC
GAGCATCGTGAGCCGGATAAACTCCAAGGTCGAACGGATCGAAGCGTGGAGGTAGAAACC
CCGGTGCCACTGCCGTTGTTGTTGTGTAATAGATGACTGACCCAGTGTTGTTTCCTTGCA
CATTTTGAATTTTCGACGCGCTTATCATTTTGTGTTTGGATCATCATCATGTTTATTTGA
GCCTGCCTTCACTAACTTATATGTATCTTGATTATGAGTAAATTTGGGGCCTTTCCTTCC
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05900.1	496	0.0	protein\|rhoGAP domain containing protein, expressed
Brachypodium v1_2	Bradi4g25457.1	471	0.0
Arabidopsis v10	AT5G22400.1	466	1e-130	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain \| chr5:7423050-7425335 REVERSE LENGTH=466