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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18231_PI390587928Hv_44K_v2CGGAAGAGTAGAGTTGTAGCACTATGTTGTACTAGTCGTAGTAACCTCTGAATTTTAACC717GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 5.5813.7161.0940.7070.4640.840
Raw 102.199114.87027.81831.7415.91313.024



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36554417532e-241694 - 175310060 / 60plus ABC14134
MLOCMLOC_3537.19362e-24656 - 71510060 / 60minus ABC14134
JLOC1JLOC1_2127.116448e-25665 - 72410060 / 60minus
JLOC1JLOC1_2126.15431e-22488 - 54310056 / 56plus
Harvest21ABC141347723e-25696 - 75510060 / 60plusABC14134
Harvest35U35_192527993e-25718 - 77710060 / 60plus



Contig Sequence (799 bp)

>U35_19252 799 Hv_44K_v2
AACAACCACTCCAACCTCCAAGTCCTGCCCACCAAAGCAAACGCCTCGCCATCTTCCGTT
CCAATCCACGCATCCAAGTCGTACGCCGGCGCGCCCAGCCGGGTGGATCTCCGAGCTAGC
GGCATTGCTGGGACTTAGATGCGAGACGCCGTCCTGCTCCGGTGCGACGCTACCATTACC
ATGGTCGGCCACGCCGCCGGTTCCACCTCTTACGGCAGCAGCAGCGTCAGGAACGTTGCC
GGAGGGTACTTTCCGGCTCCGACAGCGACCGCCAAGCAACGACGCGCGCCGGTGCCGTCG
GGGAACGGCGGGAAGAGCGACGGGGGAGGGTACTTCGGGGCCGAGGCGGCGGTTGTGCTG
GCGCTGATGACGGCGGCGCTGCTGGTGCTGCCGCTGCTGCTGCCCCCGCTGCCGCCGCCG
CCGCCGCTGTTCCTGCTCGTGCCCGTCGCCATCCTGGCCGTGCTCCTCCTCCTCGTGCTC
CTGCCCTCCGACGCCAGGGCCCTCCGCGTCGCGCCATCCTACTTGTAGCCAGCCAGTGCA
GCAGTTATATCAAATCGTGCGCTCGCCATCGTCGTCCCCGGCGCCGTGCACATGTAATTA
CCTAAGCTGGCGCGGATGCGGAGTTGTTTCTGTCTTCGTTTCTTTTCTTTTTCGAGACTA
ATTGATGGAGAGGATTTTGCTCGGACTAATTAACTGCTTGCTGGAAAAAAGTGTCTCCGG
AAGAGTAGAGTTGTAGCACTATGTTGTACTAGTCGTAGTAACCTCTGAATTTTAACCAAA
AAAAAAAAAAAAAAAAAAA



Homology of Contig U35_19252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None