barSeed - Barley Seed Development Database

Probe CUST_18230_PI390587928

Source Contig U35_33546

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18230_PI390587928	Hv_44K_v2	CGGCCGATAGGCGAAAGAGAATCCAAAAGTTTTGTTCTGATCTGAGTAGGCTCAACATAG	280	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.003	1.402	1.140	0.782	0.538	0.516
Raw	1240.927	1156.053	974.912	962.004	253.790	264.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76383.1	1104	2e-24	966 - 1025	100	60 / 60	minus	None
JLOC1	JLOC1_50936.1	3514	8e-25	128 - 187	100	60 / 60	minus
Harvest35	U35_33546	340	3e-25	281 - 340	100	60 / 60	plus

Contig Sequence (340 bp)

>U35_33546 340 Hv_44K_v2
ACCATCCAACGGACCATGGACTAAACGGCCACTGCCTGAAAGGACTATGCTATGTCCAGG
GGACCGCCGCCCTCCACAAGGTACATCTGCGCCTATGGGCCGCTATAACTATCCAAGAAG
ACACTCGAAAAAGGAAGGATAAACAAACCTACCCGGGGACGCCGAGCTACAAGTCCTACG
ACACAGGAGCGGGATTCTCTAAAAAGCCAAGGTCTGGGTGGCCAAGAGGGCCCACTGGAG
ACTTGGGATCTCAGCAGGAAATGTGAAGGTTGTTTAAAGCCGGCCGATAGGCGAAAGAGA
ATCCAAAAGTTTTGTTCTGATCTGAGTAGGCTCAACATAG

Homology of Contig U35_33546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None