barSeed - Barley Seed Development Database

Probe CUST_18229_PI390587928

Source Contig U35_19253

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18229_PI390587928	Hv_44K_v2	CAATGGATCATGTCATTGTCACCTTTGAATACAAAGAAATGGACTGAACTTTATCATCCA	1794	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.368	1.446	1.160	0.874	0.342	0.345
Raw	3403.763	5504.493	3902.647	4685.610	636.136	700.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354350	1924	2e-23	1867 - 1924	100	58 / 58	plus	ABC12867
MLOC	MLOC_8516.2	2257	2e-23	1683 - 1740	100	58 / 58	minus	ABC12867
JLOC1	JLOC1_5662.1	2378	1e-23	583 - 640	100	58 / 58	plus
Harvest35	U35_19253	1868	3e-25	1795 - 1854	100	60 / 60	plus

Contig Sequence (1868 bp)

>U35_19253 1868 Hv_44K_v2
AGCCCAAGCCTCCAGCATCGTCCTCCTCGGCTAATCCGCCCCGCCTCCGATACTCCCAAG
GCGGCAGCAGCAGCGGCAGCAACAACAACAGCAAGGGAACCAAAGGCCAACTATCTCAAG
CCTTATTACCCTCTTTCCCTCCTCCTACCCCTCCCGTCCCTGCAATGGCCGGTTTCCTGC
ACCTCCACTCCACGCTGCTGCCATCGGCGTCCCTGCTCCGCCAACGCGGCGGCGGGCACG
CCGTGCCGCGGCGCCGGCGCGCGTGCCGGGTTGAGGCGAAGATCCGGGAGATCTTCATGC
CGGCCCTCAGTTCCACCATGACGGAGGGCAAGATCGTCGCCTGGAACGCTGCCGAGGGGG
ACCGCCTCGCCAAGGGCGACCCTGTTGTTGTTGTGGAGTCTGATAAGGCCGACATGGATG
TCGAGACCTTCCACGACGGCTTCCTCGCCGCCGTACTAGTCCCCGCGGGAGAGTCCGCGC
CCGTCGGCTCCGCCATCGCGCTCCTCGCCGAGTCCGAGGAGGAGATCCCGCTCGCCCGGT
CGCAGGCCGCCAACTTCTCCTCCTCCGCCGCCTCGCCGCCGGCTCCCCAGGAAACCGTCG
CCCAAGAAGCGTCCCCTGCTCCGCCGCCGCCTCCTCCTCCGGCGCCCGTAGCAGTCTCCG
CGCCAGCACCCCCTTCATCGGCCACACAGGGCGGAGCGCGGGTGGTTGCCTCGCCTTACG
CCAAGAAGCTCGCAAAGGAGCTCAGCGTTGATCTCTTCGCAGTCACCGGCTCTGGCCCAG
GGGGGAGAGTTGTGGCGAAGGACGTAGAGGCTGCGGCAGCTGCGCCCAAGAAAGCGGCGC
CACTGGCAGCTGCTCGACCGGATGTTCCATTGGGATCCACGGTGCCATTCACCACAATGC
AGGGCGCTGTGAGCAAGAACATGGTGGAGAGCCTTGCCGTGCCGGCGTTCAGGGTCGGGT
ACACCATCACAACCGATGCTCTCGATGCACTCTACAAAAAAATTAAGGCAAAGGGGGTGA
CAATGACAGCGCTGCTGGCAAAGGCTACAGCGATGGCGCTGGTGCAGCATCCTGTGGTGA
ACTCCAGCTGCAGAGATGGGCAGAGCTTTACTTACAACAGTAGCATCAACATTGCTGTGG
CGGTGGCCATCGATGGTGGATTGATAACCCCCGTGCTCCAGGATGCTGATAAGCTTGATA
TTTATTCACTGTCAAGGAAATGGAAGGAGCTGGTTGATAAGGCTCGTGCAAAGCAGCTGC
AGCCCCAGGAGTACAACTCTGGTACCTTCACTCTTTCAAACCTTGGTATGTTTGGAGTTG
ATAGATTCGATGCGATCTTGCCACCTGGAACTGGAGCAATCATGGCTGTTGGTGCATCAC
AACCGACAGTTGTTGGTACAAAAGATGGTAGAATTGGGATCAAGTGCCAAATGCAGGTCA
ATGTTACTGCTGATCATCGTGTTATTTATGGATCTGATCTTGCCGCCTTTCTGCAAACTC
TGTCCAAGATAATTGAGGATCCCAAGGACCTTACGTTCTAGACGTACCAAGTGATTCTTT
TTCCCCGAGACAATCACATAGGATGCTTGTCAGTAGATGTGTAGCATGTTGGTGGTGTGA
ATTATATAGTTACTTAAGTTGCCGGCTTTGTTGGTATCAGGTAACCTTGTTACTTTCTCC
CCATTGGTTTGTTTCTCAATAATCCTTTTACCTTCTGTTCAGATAGGTGTCAGGCATGAG
TATTTACCTGAGTGTTTGTTAATTGTTGATTACGTTGAGCTCGATGTACAAGTACAATGG
ATCATGTCATTGTCACCTTTGAATACAAAGAAATGGACTGAACTTTATCATCCAAAAAAA
AAAAAAAA

Homology of Contig U35_19253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08170.1	468	2e-141	protein\|2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi4g41000.1	462	0.0
Arabidopsis v10	AT3G25860.1	480	2e-144	\| Symbols: LTA2, PLE2 \| 2-oxoacid dehydrogenases acyltransferase family protein \| chr3:9460632-9462585 FORWARD LENGTH=480