- Probe CUST_18221_PI390587928
- Source Contig U35_45521
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18221_PI390587928 | Hv_44K_v2 | TTCAAGAATTGCTTGGAGAAGTACTGTACGGAGGTGCAAAGGGTGGCGGGCGAGCTGCTG | 123 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.445 | 0.253 | 0.299 | 1.930 | 3.124 | 5.356 |
| Raw | 8.556 | 5.377 | 7.362 | 74.412 | 45.005 | 84.650 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_35013.3 | 1634 | 2e-24 | 719 - 778 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_35013.1 | 1599 | 2e-24 | 926 - 985 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_35013.2 | 2099 | 9e-22 | 956 - 1010 | 100 | 55 / 55 | plus | None |
| JLOC1 | JLOC1_22623.1 | 1673 | 8e-25 | 855 - 914 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44527 | 219 | 3e-25 | 124 - 183 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45521 | 219 | 3e-25 | 124 - 183 | 100 | 60 / 60 | plus |
Contig Sequence (219 bp)
>U35_45521 219 Hv_44K_v2 GGGTACGGCCAGGCGTTCGTCGTCTCGGAGGAGCAGACGCTCGACTGGGCGGACATGTTC TTCCTCCTCACGCAGCCGCCCAGCTACCGCGACCTCCGCCTCTGGCCGTCCAAACCTTCC ACGTTCAAGAATTGCTTGGAGAAGTACTGTACGGAGGTGCAAAGGGTGGCGGGCGAGCTG CTGGGAGCCATGGCGGAGAACCTGGGCTTGAAGGACCAC
Homology of Contig U35_45521 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |