barSeed - Barley Seed Development Database

Probe CUST_18216_PI390587928

Source Contig U35_21570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18216_PI390587928	Hv_44K_v2	CTCGGTTGTAGAACTTACGAATAGATGGGATCTGAACTGTAACTATTTTCATGTACTCAT	837	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.670	1.825	1.099	0.795	0.380	0.356
Raw	1154.330	1966.638	1043.475	1166.204	198.780	206.494

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63393.1	1367	2e-24	46 - 105	100	60 / 60	minus	ABC25606
MLOC	AK248724.1	2284	2e-23	2227 - 2284	100	58 / 58	plus	ABC25606
JLOC1	JLOC1_41514.1	1281	8e-25	1171 - 1230	100	60 / 60	plus
Harvest21	ABC25606	902	3e-25	65 - 124	100	60 / 60	minus	ABC25606
Harvest35	U35_21570	961	3e-25	838 - 897	100	60 / 60	plus

Contig Sequence (961 bp)

>U35_21570 961 Hv_44K_v2
CTCTCTTCAGGGCCTCCCGGCTTTGACAGACCAAAGAGGCCTAGACTAGAGCAGCAGGCT
GGTGATACGGGGGCTCCCCCTTTCTTTGCCCAAGTACCACAAGTGCAACAACAGATAGGA
GCGGCACCTACTTCTCATGGAAGCACACAGTCACTAGCACAGGTTAACCAAGTACCAGGT
TCATTTGCACCACCTCCATTGCAGCCTATGGTGCCGCAACTTATGCAGCAATTTAGTCAA
AATACTGGAGGTCCTGGAGGAATGTTCGGAATGATACCCTTTGGGATGATGGCTGGCTCT
TTGCCACCTCCACTTCCATTGTTGCCTGCAGGTTTTGCAATGCCAAATGGACCGCCGCCT
CCACCTCCTCTGCCACCCATGCAGAACCACCACCAGCAGCAGCAGTCTCCACAGGCACCA
CAGCAATCTCCAACATCAACTGGATTCTTCCCAACTTCAAGCACTGGGTTCTTCCCTCCA
GTTCAGGTGCAGCAATCTCCATCCGTCCAGCGGCAATGATGTTATCTTATGAATGTCGGG
GTATAAAGGCAGCAGCTTGTGCTATCTTTGTACATTAACAATAATCCCCGAGTATTATGC
GGTTAGGTTACAGGTCCTGTAGGCGAAACAGGATCACTGCCTACGAAAATAGGCGTACGG
CTTGTGTGATGTATAACTGTTCCTTTTGGTCTGAAAAGCTTGGTCGATACTTCCTGACCA
TATGAAGTAGTTAGACTTTTCTTTGCATAGCTTGCTTAATTAGCTCAGAGACAAACAAAT
GGGTGATACTGTTAGCTTAAATTGTTGTTGCCCAATGATGTTAACATTTTAGGGCTACTC
GGTTGTAGAACTTACGAATAGATGGGATCTGAACTGTAACTATTTTCATGTACTCATATT
GTTGTTCACGTTTATTTATTATTATTTTATAATGTTTGCCCTGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_21570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None