barSeed - Barley Seed Development Database

Probe CUST_18214_PI390587928

Source Contig U35_21572

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18214_PI390587928	Hv_44K_v2	TAGCGGGAAATCTCCGAGGATTATGCTGGAGTAATTTTTAATTTTTCCTTGACCAAAAAA	837	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.304	6.028	1.418	0.759	0.440	0.464
Raw	101.884	163.918	31.262	24.553	4.439	5.506

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64453.1	1663	9e-22	1044 - 1098	100	55 / 55	plus	ABC14163
MLOC	MLOC_64453.2	1557	9e-22	1005 - 1059	100	55 / 55	plus	ABC14163
JLOC1	JLOC1_42322.1	1465	5e-22	1044 - 1098	100	55 / 55	plus
Harvest21	ABC14163	908	3e-25	12 - 71	100	60 / 60	minus	ABC14163
Harvest35	U35_21572	908	3e-25	838 - 897	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_21572 908 Hv_44K_v2
CACAAGCGTTCAAACGCAAAAACAGCACGCACAGCACGCACCAGACACTCAGACAGCCAC
GGGTGAAGGGCACACTCCAGAGATGACCGAGCGAAGGCAGGAGGAACACTCGCCGCCGTC
CAAGCTCCCCCGCCTCTCCGGCGCCGATGACGACGCCGACGCCAACGACGGCGTAGGCAC
GGTGACCATGGCCGCGCCGTTGCCGCTGGCTCTTGGGCTGGGCCTCGGCGTGGGCGGCTG
CTGCAGTGACAGCAGGCGCAGCGACGCGGAGGCCACGCGGCCGTCGGCGCTGACGTTCAT
GCAGCGGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCCAACGCTCC
CGTGCCCGTGCACCTCGTCCTCCCCATCTGGAAGAGCCTCGCCGCCTCCTCCTCCGCTCC
TCAGAGGTTCCCATCACTGGCGGGGCTGGGGAGCATGTGCTACGACCAGAGGAGCAGCAT
GGAGCCGGAGCCGGACAGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCACGG
CGTGGTGCCGGGGCACAAGTACTGCGAGCGCCACGTCCACCGCGGCCGCGGCCGTTCAAG
AAAGCCTGTGGAAGCCGCGGCGGCCACCTCAGCCACCCCGATCCGCGCAATGCACGTCGC
CGACGGGCAGGGCGCCACCGGCGCGCACGCGCACGCGCCGCCGCAGCGTCTCAGCTTCTC
CTCCCCCGCCGGCGTCTACCTGGCCCACGGCACCGCCCGTGCCACCTGACCTGATGCCGG
CGTGTTCCTTCAGTTAGCTGCAGATGTTTTGCTTGCTTGGTTGGTTGTGTTGATCTGTAG
CGGGAAATCTCCGAGGATTATGCTGGAGTAATTTTTAATTTTTCCTTGACCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48510.1	237	3e-75	protein\|growth regulating factor protein, putative, expressed
Brachypodium v1_2	Bradi3g51685.1	215	3e-66
Arabidopsis v10	None