barSeed - Barley Seed Development Database

Probe CUST_18207_PI390587928

Source Contig U35_21579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18207_PI390587928	Hv_44K_v2	GCTTGAAAGGGACTTGTATGCGTCTCATTACAAATGGATATGGAAAGCTTGCATCCCTCT	761	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74276.1	1566	2e-24	1466 - 1525	100	60 / 60	plus	ABC15872
JLOC1	JLOC1_49496.1	6299	8e-25	22 - 81	100	60 / 60	minus
JLOC1	JLOC1_49495.2	6115	8e-25	6035 - 6094	100	60 / 60	plus
JLOC1	JLOC1_49495.1	4537	8e-25	4457 - 4516	100	60 / 60	plus
Harvest35	U35_21579	852	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_21579 852 Hv_44K_v2
TCAAGTCATTGAAAGATCGTACCACCAATTTCTCAGCATGAAAACAAGGATGAAAGATAA
CATTAGGGAGTTATTGTTGAAAATGGAGGCAACAAAACAAAATCTAAGCACATAAACGAG
GTTACTGCCGTGTTTGGTTGCAGATACCAAACTTGCTGAGCTTAGTGAAGGCAGACTCCA
TATTGTGACCATCCCTCGAGCATGATGCGGCTTACATGTCTGGTTGGCAAACGACTTGTC
ATCTTTCTTCAGAAGACAGTAATGCTGAATATCAAGAAGGTGCAAGCAGACCAGCAGGTC
TTATTCCTAAGAACCGGTTTTGCTGATCCAGTTTTGAATCTGGTATGACGGAACAGCGCT
GGTTTTAAGCCAACAGCTCTGTAAGCTCGTGGAAACAGAATCTTACTGGGTCCACAGTGG
CAATGGGATTATGTTAGAGGCCAGTTGGTGGTAGTGTATGTAGGGCATGGAACTGGATCT
GTAAATTATGATACATTGGTACTTCTCATTTTCGATGGGAATATGCATCAGGCCATGTCT
CAAATGGCTGCTTAGTTTGTAGTCTCTCTGCAACTGATGAACGAAATTCTGCCCGTGTTA
TCGAGGACTATCTCAGTTATTCTATGTTTGGGGAGCTTATTGATCAACGGCATGATATTA
GATCTGCTGCTATGAAATTAATGTTAATTTGCTTCCTGATAATATCTCTTGGTCTCTCAA
TAACATGGGTATTTTTTTTACTATAAGCCTGTATACGAGTGGCTTGAAAGGGACTTGTAT
GCGTCTCATTACAAATGGATATGGAAAGCTTGCATCCCTCTAAAAAAAAAAAAAGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_21579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None