barSeed - Barley Seed Development Database

Probe CUST_181_PI390587928

Source Contig U35_19585

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_181_PI390587928	Hv_44K_v2	GCGTTGGCCTTTTCAATTCCATGTGTTTGTGTGGTTGATTGTGATCGTGATTGTTTAGTG	2108	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.627	1.567	1.190	0.802	0.277	0.292
Raw	1215.146	1842.543	1213.643	1283.726	156.161	179.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12615	2168	3e-25	2109 - 2168	100	60 / 60	plus	ABC12615
Harvest35	U35_19585	2168	3e-25	2109 - 2168	100	60 / 60	plus

Contig Sequence (2168 bp)

>U35_19585 2168 Hv_44K_v2
GGTGGGGATCAGTCAGGCAAGTTCATTAAAGCCTGTGAACTTAAGGGCCATTCTGACTGG
ATTAGAAGTTTAGACTTTTCTTTACCTGTGATGACAAGCAGTGAGAAACACAGCCTTTTT
CTCGTTAGCTCGTCTCAGGACAAAACCATTCGGATATGGAAGATGACTTCAGATGTGCAA
CAAAGGAAGGATAACATTGGGATGGCCTCCTACATTGAGGGTCCTCTATTTGTGACCGGT
AATACAAGTTACCAAGTTTCATTGGAGTCTCTTCTTGTTGGGCATGAAGATTGGGTATAT
TCAGTAGAGTGGCAGCCTCCTACACTGGTACTTGGCGGTGAAGCTCATCAGCCAATGAGC
ATATTATCTGCATCTATGGACAAGATGATGATGATATGGAGGCCAGAAAAAAATACCGGC
CTTTGGATAAATTCAGTGACCGTTGGTGAATTAAGTCACTCGGCACTTGGATTTTATGGT
GGCCATTGGGAACCTGATGGTAAATCTATTCTTGCACATGGCTATGGTGGATTTTTCCAT
ATGTGGAGAGATGTTGGACTGGATTCTGAAAATTGGAAGCCCCAGATTGTCCCATCTGGT
CATTTTGCACCTGTATCTGACTTAACATGGTCTAGATCCGGCGAATATTTGCTAACAGTT
AGCCATGACCAGACAGCACGCATATTTGCTCCTTGGAAAAGTCATGTTAACCCAGGAGAT
GTGATTTGTTGGCGCGAAATTGCTCGCCCCCAAATCCATGGGCATGACATTAACTGCGTG
ACATTCATTCAGGGTGCAGGAAACCACCGGTTTGTTTGTGGTGCTGATGAAAAGGTCTGT
AGAGTCTTTGAAGCTACTTTATCATTCCTGAAGACCCTACAGGAAGCAACTTTGTTGAAA
CCTGACAATGAGGATTTTGACGATGTGCAAGTCCTTGGAGCAAATATGTCTGCTCTTGGG
CTTTCACAGAAACCTATATATACACATGGAAAGGAATCCCCAAGCAGCGCTTCTAATGAT
GGTCCAGATTCCATGGAGACGATTCCTGATGCAGTGCCAACTGTGTTTACTGAGCCTCCT
GTCGAGGACCAGCTGGCATGGAATACCTTATGGCCTGAATCTCACAAACTTTATGGGCAT
GGAAATGAACTCTTTTCCATCTGCTGTGATCATGCAGGGAAGCTTGTTGCATCGTCGTGC
AAGGCTCAATCAGCACAAGTTGCTGAGATCTGGCTCTGGGAGGTTGGAACATGGAAAGCC
GTTGGTCGCTTGCAGTCTCACAATCTGACAGTCACACAAATGGAATTTTCTTCTGACAAT
GCTTTTCTTCTGAGCGTATCAAGGGATCGTCACTTGTCTGTCTTTTCGATTAAGAAAACT
GAGGAAGGAGCGCAGCATCACCTGGTTACAAAGCATGAAGCACACAAAAGAATCATATGG
GCATGCTCGTGGAACCCGTTTGGATACGAATTTGCAACTGGTTCAAGGGACAAGACTGTC
AAGATTTGGTGTGTTCAAGACACATCTTCAGTCAAGCTGCTCGCAACATTGCCTCAATTC
CGTGAGAGTGTCACAGCATTGGCCTGGACGGGCCGTGATCGAGCTCGTAATGCCGGCATT
ATTGCCGTTGGCATGGACAATGGACTGATCGAGCTCTGGAGTGTTTCAGGGGGGAGAGCT
GCTTCAGACAGTAGCTCGGATCGGTCTCCCCTCAACGTCGCATGCATGCTCCGGTTTGAT
CCTCTGTTGTGTCACGTGTCAACTGTGCACCGTCTGCGGTGGCAGAAACCTGACTCAGCT
GTTGAGAAAGCAGCAGTTGAGCTAGCTTCTTGTGGAGCTGATCACTGCGTCAGGGTGTTT
GCAGTCCGTGATAGTTGAGGTATTTATGCAACACTGTGACTCCGAAATTTTGAGCACCCG
CATCTATTTTCTCAGCAGGACATAGGTGTATACGTCTAGCTCTAGTGGATTAAAATCCTG
GCTGTTCTTGATGCCCTTGGCATATTCCTTGATGTGGTTCTGTTTGTGAGAAAGAGATAA
TATTGCTATATTGCAAAGCATATGCTGAGCTGTTCATATGTAAACTGTAGTTGACCATGG
AATGCAGTGCGTTGGCCTTTTCAATTCCATGTGTTTGTGTGGTTGATTGTGATCGTGATT
GTTTAGTG

Homology of Contig U35_19585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g38570.1	850	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g39160.1	845
Arabidopsis v10	AT1G49540.2	840	\| Symbols: ELP2, AtELP2 \| elongator protein 2 \| chr1:18333767-18337382 REVERSE LENGTH=840