barSeed - Barley Seed Development Database

Probe CUST_18183_PI390587928

Source Contig U35_21583

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18183_PI390587928	Hv_44K_v2	TACTGCTACAAGTGGTATGGTATTCTCCCGCAGGTCGCCGCTTGCCTTTGCTTCGCCTTG	85	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66780.1	1533	2e-24	1054 - 1113	100	60 / 60	minus	None
JLOC1	JLOC1_44044.1	1318	8e-25	220 - 279	100	60 / 60	plus
Harvest35	U35_21583	691	3e-25	86 - 145	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_21583 691 Hv_44K_v2
CGAGCACCACAGCGTGCACCGCTGTTGCCGCACCACAGTCTCGATAGATATAGGAGCCGC
TAGGCAGGCTACCAGCCCCAAAAACTACTGCTACAAGTGGTATGGTATTCTCCCGCAGGT
CGCCGCTTGCCTTTGCTTCGCCTTGCCTAGCTACTCTCTGCTGCTGCTAGCTAGCTCCCT
CCCGGCCGATACCAAACTTGGCAACCCGTGAGTGGGCGGCCCGGCTGCAGCAGCACCAGC
ACTAGCACTAGTACCTCTGTCTCCTCCGCTCCCGCTCCAGTCAAGGCTGCCTCCTCGCCT
CCCCTTCTCCTCCACCTGCTAGCTCCCTCCCGGACGGATTGATTGCTCCGTTGGCTCTGG
AAGCGGCCGGCATGGGCAGCAGGGAGCAGCAGCGCGGCAGGAGGGACCGCTTCATCGTCA
TCCCCTTCTCCTCCACCTGCCGCTCCGCCGCCAGCGTCGACATCGTCCAGTCCAAGAAGC
CCCAAGGTGCTGGCGGTGGCGGCGAGGGGACGTCGGCGGCGGCGGTGGTTAGGCCGGCCA
AGGGGGAGTCGCTGTCGGTGGTGGCGCGGCTGCTCCGCGGGTTCAAGAACCTGTCCCACC
AGATCTTCGCGGTGTACGACGAGGACGACGAGGAGGAGGAGCCGGAGATGGTGATCGGCC
TCCCCACGGACGTCAAGCATGTCGCGCACAT

Homology of Contig U35_21583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None