barSeed - Barley Seed Development Database

Probe CUST_18180_PI390587928

Source Contig U35_21586

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18180_PI390587928	Hv_44K_v2	TCTTTCTACCTGCAGAACTTACTTTCATGTTTCAACTGTTACGCAATCCAGATCATTTCT	808	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251723.1	2721	2e-24	2659 - 2718	100	60 / 60	plus	ABC25159
MLOC	MLOC_21503.1	4296	2e-24	1654 - 1713	100	60 / 60	minus	ABC25159 ABC48683
JLOC1	JLOC1_14918.1	2837	8e-25	2755 - 2814	100	60 / 60	plus
Harvest21	ABC25159	888	1e-23	21 - 80	98	59 / 60	minus	ABC25159
Harvest35	U35_21586	897	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (897 bp)

>U35_21586 897 Hv_44K_v2
GCTTGGAACCGCGGTCCGTATTCCTTGTGAGGTTCTTAAGCAACGGTTGCAGGCTGGAAT
CTTCGACAATGTAGGGGAGGCCATTGTTGGTACCATGCAAAAAGATGGCCTAAAGGGCTT
CTTCCGTGGAACTGGGGCCACTCTTTGTCGTGAGGTTCCTTTCTATGTTGCAGGAATGTG
CCTTTACGGTGAAGCTAAAAAGGCAGCACAGCATGTCTTGAGCAGAGAGTTGGAACCATG
GGAAACTATAGCAGTCGGAGCATTGTCTGGAGGGCTTGCAGCAGTCGTCACCACTCCCTT
CGACGTGATGAAGACCCGGATGATGACTGCCCCTCCAGGCACGCCAGTCTCCATGCAGTT
GATAGTCTTCTCCATCCTCCGAAACGAGGGCCCCCTAGGGCTCTTCAAGGGTGCGATCCC
ACGCTTCTTCTGGATCGCTCCTCTGGGAGCAATGAACTTTGCAGGCTACGAGCTCGCCAA
GAAGGCCATGATCGAAGCTGAGAATGAGGCCGCCGACCCTTCACAAGAGAAGAAGAACAT
GGCGGGTTCTAGAGGATGACAGGCACACTCAACCAGTCAAACCTCCTCTATGATGTAAAG
AGAGAACTGGAGACATGCAACAGAAGTTTTTGTGCCCTTGTTGCAAAGGACAGGACAGAT
ATTCCACACGGCCTTCTTACAAATGATGTTAGGTTATCCTTTCCCCTCTCGCGGAAAACT
TTTTTGATTTTCCATTTCCATAGGCCTTTACAACACTCTGTATGTATAGCACACTAGACG
GCAGGAACTACAGGAGTTGGCATGCTGCTCTTTCTACCTGCAGAACTTACTTTCATGTTT
CAACTGTTACGCAATCCAGATCATTTCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01240.1	667	1e-100	protein\|mitochondrial substrate carrier family protein, putative, expressed
Brachypodium v1_2	Bradi4g45190.1	730	4e-104
Arabidopsis v10	AT2G35800.1	823	2e-76	mitochondrial substrate carrier family protein \| chr2:15044437-15048352 FORWARD LENGTH=823