barSeed - Barley Seed Development Database

Probe CUST_18177_PI390587928

Source Contig U35_21589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18177_PI390587928	Hv_44K_v2	TTTATGCAGTGTAGAGGACGACTGTTGTGAACAAGTGGCAGTTTGGGCATGACATCATTG	596	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.758	1.922	1.300	0.735	0.322	0.370
Raw	3255.997	5685.967	3279.007	2924.406	449.243	557.808

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368724	4077	2e-23	3939 - 3996	100	58 / 58	plus	ABC16899
MLOC	MLOC_74117.2	1116	2e-23	1023 - 1080	100	58 / 58	plus	ABC16899
MLOC	MLOC_74117.1	1254	2e-23	1133 - 1190	100	58 / 58	plus	ABC16899
JLOC1	JLOC1_49379.1	1157	1e-23	1025 - 1082	100	58 / 58	plus
Harvest21	ABC16899	730	1e-23	597 - 656	98	59 / 60	plus	ABC16899
Harvest35	U35_21589	730	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_21589 730 Hv_44K_v2
CGTCTGGAGTCCGATGGGGACGAGGAGGAGGATGAGGAAGAGGACGAGGAGGGGGATGAA
GAGGGGGCGGAGGACGGTGAAGGGGAAGGAGAAGAAGAGGACGGGGAGGAAGAGGAAGGA
GACGAAGAAGAAGATGGCGAGGAAGGAGATGAAGATGAAGAGGAAGGCGACGAGGCTGAA
GATGAAAAGGATGAGGGCGAGGACGACGAACCGGATTCAGGCGTGGCCGAGAAAAGCGAG
GTGACCAACGGAGACAAGTCTGCAGGATCTGCCCTGCCAAGCAAGAGGAAAAGGGGCGAA
GAAGATGCCGCTGCTGGAGACAACTGAATGTGGTGGTCTCGGTTGAGGTTTGCGGGTTCG
TCTTTGCACTCTTTTCAGAGGTTTCCGTGCGGGATATTTGGCGGAAGCAAGATTGGTAGT
TGTTGTCAAAGGGTTTTCTGAGAGTTTTCAATTTTTATTCAGGATGTGAAATTTCTGGTG
CTATAAATCATGCGTTGACTCGGATCATGAGGATCGTTCATGGTTGCAATGTATCATCTC
GACCATAAAAGCCACACGTAGGGCTTGTGCCGCATTGTTTGTGCGGGAGTCGGCTCTTTA
TGCAGTGTAGAGGACGACTGTTGTGAACAAGTGGCAGTTTGGGCATGACATCATTGGTCG
AGCCCCCCATCCAAAAAAAACTCAACTGTAGTTTTTGATCTTGAAAAAAAAATAAAAAAA
AAAAAAAAAA

Homology of Contig U35_21589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None