barSeed - Barley Seed Development Database

Probe CUST_18168_PI390587928

Source Contig U35_19277

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18168_PI390587928	Hv_44K_v2	GAGATTTACTTAAACAGGTTCAATCAATTGAAGCCTCCTGGCATCTCTTTTGTCAAAAAA	1835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6138.1	5179	9e-22	23 - 77	100	55 / 55	minus	ABC11842
MLOC	AK251343.1	5287	3e-21	5234 - 5287	100	54 / 54	plus	ABC11842
JLOC1	JLOC1_3982.3	5925	5e-22	5799 - 5853	100	55 / 55	plus
JLOC1	JLOC1_3982.2	5151	5e-22	5025 - 5079	100	55 / 55	plus
JLOC1	JLOC1_3982.1	5281	5e-22	5155 - 5209	100	55 / 55	plus
Harvest21	ABC11842	1906	3e-25	12 - 71	100	60 / 60	minus	ABC11842
Harvest35	U35_19277	1906	3e-25	1836 - 1895	100	60 / 60	plus

Contig Sequence (1906 bp)

>U35_19277 1906 Hv_44K_v2
GAAGCATTCATGTGAATATGAAAAATGAGACACGAATGTATGACAACCTAGACCTTATAA
TAGCTCGATCTGCTGGGACCGTTAGCCAGTCTGAAAGGGGGGGTGATGGTTTAGGTGAGG
ATTCATTGAGTATCAGATCAAAGCCCGTGGGATGGGATATGTTGCCCGAAGATAAGAGGC
ACTCTCAACAAGATTCAAGAGACAAAGTTGATTCTCCTAACCTGTGTGTTTTAGGTACAT
TAGAGGCAGCTGAAGCCTGTGAATCGTTTCGACAAACGGGGTTCCCAAATAGAGACGTGC
AATCATGGCTTGATCGGCGAAGATCATTTGACAGACCCCAAAGAAATGAGCACTGCAGAT
CTGATGATGGTTATGGTTCTGGCTCAAAAGCTGAAAGGTCTGTTGATAGGCCACATGGTA
GGGGTGGAGCATCTAGGCATATTCAAGCAAACATCCGAGGGGAGCAGTGGGCTGAAAATT
CAAATAGTTCTCGTTCTACCCAGCGAAGATCACCTGATTATAATAATTATGGCCCAGCTG
GTCCAAGAAATGCTGCTGAAGCTGCTGTTGCAAAGATGGAGAGCAGTGGCTTTGTTGTTG
CACCTGATGGCACTTTGGTAAGAGCTGTTGATGCAGCAAATACAAGTGCCATGTCCGGAA
GGATGAGAAACAAAAGTAGCTTCTATCACCCTTTGTCTAGACGGCGTTCCCCAGTTGACA
GAGATGGAAGAGAACCAGCACATGCTAGGGAAGCACCTCCAGAACGATGCTTTGGTGCTA
GTGGCAGCCGGTCTGGTCGATATGGTCCTCAGATGGATAAAGATGCCATTGATGAAAATT
TGGGTTCAGTTCATAGCTCACTGTCTAATAGACAACGGAGGTTCCCACCGCATAGAGCCT
CACTCGACCTTTCACGTGCTCACAGCAGATCTCCTTCAGGATCTAGATCTCGATCACCAC
ATGCTTGGACATCCAACGGAAGCTCAAGGAGGCATAGTAGATCTCCTAATTACATGACTG
AAGTTAGAATTGGTAGAACGACTTCACCTCAAAGACAACCTCGATTCAGTGATCGAGTTA
TGCGTCATAGTCCTTCATCAAGAAATCCCACTTACTCTGAACGTGATTCAACATGGGTTG
AAGGAAGGAGCTGTTCAACACTAGATATTTCTTATCACAAGAAAAGATATTCTCGGAGGA
GCCCACCTCCAAGAATCACTTCAAGAAATGACATGTATGATTTAATGGATTCCCAAGGGC
GGTCAAGATCTCGAGAATTCCACTGCCCAACACGGGACTTCAAAAGGGGAAATAAGCATG
ATGGGAATGGTGATGATAAAAGATGTAATGATAGGTATGGAACTGTCAAACCATATGAAC
ATAATGATGCTGCGAAGCAGTTCAGGAATCATGCTGGAGATACACTTCATCCGCACATTT
CTGCACCCAGATCACCTGAACCGCAAAGAGGAAGCCCTCGGAGATTTTGACGAGGACTTT
GAGAGGAAGCTGGTTGTGTATTTGCCTCGTTGTTGTGGAACTAAAGCAGATAATAAGAAT
CCTTGAGTTTTGATTGAACTGGAAAGGACAATACTGCAAATCCATGATGATATCAATCAT
TACTATTTGACAAAGGGTCATCTGTTCAAGCCACATAAGAGCTGAAATTATGCACCTCTC
GGAGTGAAATGCAGATTAACTTCACAATTTTCCAGTTTTCCCTTGTAAATATTTATATCA
GTAGTAGGACCACAGTTTTCCCTTTTGGCTTTTCTTTTTATTCGATATTTTACCTCTCCC
TTTGCAATCTTATTTAATGGGCATTATCCCTGTATGAGATTTACTTAAACAGGTTCAATC
AATTGAAGCCTCCTGGCATCTCTTTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33320.1	1464	1e-173	protein\|expressed protein
Brachypodium v1_2	Bradi3g36437.1	1659	0.0
Arabidopsis v10	None