barSeed - Barley Seed Development Database

Probe CUST_1815_PI390587928

Source Contig U35_47274

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1815_PI390587928	Hv_44K_v2	TTTCAACAGAAACAGAAACCTGCTGCTCCGTGGATAGCTGGACGAATCCAAACGAATCAA	492	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	1.082	1.907	1.150	0.373	0.389
Raw	25.706	37.664	62.564	57.819	6.633	6.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54883.1	3202	2e-24	834 - 893	100	60 / 60	minus	None
MLOC	MLOC_54883.2	3401	2e-24	830 - 889	100	60 / 60	minus	None
MLOC	MLOC_54883.3	2431	3e-21	3 - 56	100	54 / 54	minus	None
JLOC1	JLOC1_35355.1	3138	8e-25	2232 - 2291	100	60 / 60	plus
JLOC1	JLOC1_35354.1	2687	2e-21	910 - 963	100	54 / 54	minus
Harvest21	ABC48165	647	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_47274	647	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_47274 647 Hv_44K_v2
GCAAAAACAAGTCAGCACTGAGATTGTTTCCTTACATTTACCTCACCAGTTACAAATCAT
TACCTGGTTCTAGATTTCGCAATCATTCCGTGGAAACACGGTCAATGGAGAACCTGAACT
CGGAGCCAACTTCAAGCAATACATCAAATACTAAACCTGGTGACATAGATGGTGATTATT
TGGGAATTCTTCTGGAGCAGAAATTGAGAGAATTGACCTCTCGGGTGAAGTCACCCTATT
CTAAGCCAGCCAATGGGGTTCGAGTATATGCCCCTTCACCAGGTTCGGAAGATACATCTA
GCATTGCATCTACTGAGTATGATAGGGAGTCTTCTCAGCCTTTCAAGGATGGAAAAAACA
AATTCTACCAGAACGATCTTGAATCGAAAAGTGGTCAGTCATCTCAATCTGTGAAGTTTG
ATAATGATTTCATCGATCAAGTGGGGTTAGACCATCTCCACTTCAGCCCCCGTTCTACGT
GGGAAGTCTCTGTTTCAACAGAAACAGAAACCTGCTGCTCCGTGGATAGCTGGACGAATC
CAAACGAATCAAGGTTGTTTAGTTCGGCAGAAGGGGCAGCAACTTCTAGTTCTGCACAGG
ACGGTGGATCCCAAGAAGTGGACGCCTCGTCTGAATATTCTGACACG

Homology of Contig U35_47274 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g12976.1	899	1e-63
Arabidopsis v10	None