barSeed - Barley Seed Development Database

Probe CUST_18159_PI390587928

Source Contig U35_21590

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18159_PI390587928	Hv_44K_v2	GGCCGATGATTAATCGTGCGATAAAACCACGCGGGAAACCAAAAAGGAAATGCTGATTAA	1019	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.393	1.436	1.105	0.854	0.357	0.300
Raw	844.125	1341.635	923.827	1123.655	164.809	149.813

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6836.4	2130	2e-24	2067 - 2126	100	60 / 60	plus	None
MLOC	MLOC_6836.3	2753	2e-24	21 - 80	100	60 / 60	minus	None
MLOC	MLOC_6836.1	2088	2e-24	26 - 85	100	60 / 60	minus	None
MLOC	MLOC_6836.2	2204	2e-24	26 - 85	100	60 / 60	minus	None
JLOC1	JLOC1_4472.3	2567	8e-25	2410 - 2469	100	60 / 60	plus
JLOC1	JLOC1_4472.2	2839	8e-25	2682 - 2741	100	60 / 60	plus
JLOC1	JLOC1_4472.1	2277	8e-25	2120 - 2179	100	60 / 60	plus
Harvest21	ABC34222	630	2e-22	553 - 607	100	55 / 55	plus
Harvest35	U35_21590	1094	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1094 bp)

>U35_21590 1094 Hv_44K_v2
TCGAGCACTGTTGGGCTACTGGTAATTATCACGCCTTAAAGTTCCTACCTGATATTGAAG
AAATGGCTGATAAGTTGGCAACAAAGATGAGGAACCGAACTACCAGCGGGAATCCATACA
TGGCCCTTCATCTGAGATATGAGAAAGGAATGGTGGGCCTGTCCTTTTGCGATTTTGCTG
GAACACGTGACGAGAAAGCGATGATGGCAGCTTATAGACAGAAAGAATGGCCACGGCGCT
TTAAGAATGGATCTCACCTGTGGCCATTAGCATTGAAAAAGAGGAAAGAAGGGCGTTGCC
CCCTTGAGCCTGGCGAGATAGCTGTGATCCTGAGAGCACTGGGATACACAAGGGAAACAC
AGATATACGTCGCGTCAGGGCAAGTGTACGGCGGCAAAAACAGGATGGCTCCCCTCAGGA
ACATGTTCCCCAACCTGGTGACCAAGGAGGAGCTGGCGAGCGGGGCGGAGATGGAGCACT
TCCGGAAGCACGTGACGAGCCTGGCGGCGCTGGACTTCCTGGTGTGCCTAAAGTCGGACG
TGTTCGTGATGACGCACGGCGGCAACTTCGCCAAGCTCATCATGGGGGCGCGGCGCTACA
GCGGGCGCCACCGGCTCAAGTCCATCAAGCCCGACAAGGGGCTCATGTCCAAGTCCCTCG
GCGACCCGTACCTGGCCTGGGCCTCCTTTGCCGAGGACGTCGTGATCTCGCACCAGGCCC
GCGCCGGCCTCCCCGAGCCCACCTTCCCCGGCTACGACCTCTGGGAGAACCCCCTCACCC
CCTGCATGTGCAGAGCATGAGACGGACCGAGTAGAGTGACAGCCGCTGCTAAGCTAGCTA
TGGAGTATGGACTATAGTGCTTTTCCTTGATGTCCTCCTGATTTTGTTCATATTGACACT
ACTACCAGAGCAGCAAGTGCTCCTGCGGCCTTGGTATCCGAAGTTTGTGTGTTGTGTGTA
GATGATCAGAATTCGGTAGCGGTGAAGCACGGGTTTCTCGAAACAGATATTGCGTTCTTG
GCCGATGATTAATCGTGCGATAAAACCACGCGGGAAACCAAAAAGGAAATGCTGATTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_21590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g06400.1	574	2e-167	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi3g04480.1	570	5e-176
Arabidopsis v10	AT3G26370.1	557	4e-155	O-fucosyltransferase family protein \| chr3:9656886-9659741 FORWARD LENGTH=557