barSeed - Barley Seed Development Database

Probe CUST_18154_PI390587928

Source Contig U35_5947

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18154_PI390587928	Hv_44K_v2	ATTATTGGACTGGAAGTGAATAACTGCATGCTCCGATTGGATATGCACTTGCATAAAAAA	845	GeneList: royalblue MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.272	7.796	1.852	0.685	0.617	0.543
Raw	106.778	149.765	27.796	15.914	3.762	2.996

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65876.3	824	9e-22	729 - 783	100	55 / 55	plus	ABC18280
JLOC1	JLOC1_43369.2	1484	5e-22	1281 - 1335	100	55 / 55	plus
JLOC1	JLOC1_43369.1	1524	5e-22	1321 - 1375	100	55 / 55	plus
Harvest35	U35_5947	916	3e-25	846 - 905	100	60 / 60	plus

Contig Sequence (916 bp)

>U35_5947 916 Hv_44K_v2
GCGCCGCTGCCGCTGCCGCTGTCGCCGCCGTCGACCATGCTGCCCGTGTGGCCGCGGCAC
CTGGCGCCGCCGCCGGCGTGGGCGCACCAGCCGCCGGTGGACCCCGTCTACTGGCACCAG
CAGTACAACGCTGCGCGGAAATGGGGTCCGCAGGCAGTGACGCAGTGCGTTCCGCCGCCG
ATGCCTCCTGCGGCCATGATGCAGAGGTTTGCTGCGCCGCCGATGCCGGGGATGATGCCG
CATCCCATGTACAGGCCGATCCCGCCGCCGCCGTCGCCGGTGCCGCAGAACAATAAGGTG
GCCGGCCTGCAGCTTCAGCTCGACGCCCACCCGTCCAAGGAGAGCATCGACGCAGCCATC
GGAGACGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTGGGGCTCAAGCCCCCGTCGCTG
GACAGCGTCATGTCGGAGCTGCACAAGCAAGGCATACCCAAGGTCCCGCCGGCGGCCACA
ACCAACTGCGACGGCGCCGCCTGAGACTACGTACGTCTCCACCACCACCGGCGCCGGAGC
CACCATGCTGCTGCAGCTGCTTCCGCCCTCTCTCTCTCTCTGGGTGACACAACTCGTCGA
CTTCTCGTCCGTCTGTACCTACGTGCATAGGCATGACTGATACCTGCCGGCCGGTCGGTC
CATGTACGCATGCGCGTGTAGATTAATATATATACTCTACCTGATAGTTATAATAATGTA
CTGTCCTGGGTGTGTCTGTATGAGTGCACTGACATGGATCTCTGGGTTTTTCGTCTCGTG
TACGTGCGTGCTGTGCGCACACACGAGGGTTGTTGCGTCTATATTGCTGAGATGGAACGA
CTTATATTATTGGACTGGAAGTGAATAACTGCATGCTCCGATTGGATATGCACTTGCATA
AAAAAAAAAAAAAAAA

Homology of Contig U35_5947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None