barSeed - Barley Seed Development Database

Probe CUST_18147_PI390587928

Source Contig U35_5952

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18147_PI390587928	Hv_44K_v2	GTAATTTCGTTTCGGTTGTGCCAACACATCACCAATAATGCAGTTGCGGTTGACAAAAAA	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55259.1	3546	7e-23	53 - 109	100	57 / 57	minus	ABC13943 ABC13944 ABC14735 ABC48262
MLOC	MLOC_55259.2	3586	7e-23	31 - 87	100	57 / 57	minus	ABC13943 ABC13944 ABC14735 ABC48262
JLOC1	JLOC1_35632.7	3619	4e-23	3440 - 3496	100	57 / 57	plus
JLOC1	JLOC1_35632.6	3610	4e-23	3431 - 3487	100	57 / 57	plus
JLOC1	JLOC1_35632.5	3610	4e-23	3431 - 3487	100	57 / 57	plus
JLOC1	JLOC1_35632.4	3613	4e-23	3434 - 3490	100	57 / 57	plus
JLOC1	JLOC1_35632.3	3593	4e-23	3414 - 3470	100	57 / 57	plus
JLOC1	JLOC1_35632.2	3691	4e-23	3512 - 3568	100	57 / 57	plus
JLOC1	JLOC1_35632.1	3564	4e-23	3385 - 3441	100	57 / 57	plus
Harvest21	ABC13943	533	1e-23	12 - 71	98	59 / 60	minus	ABC13943
Harvest21	ABC48262	349	6e-22	12 - 71	97	58 / 60	minus	ABC48262
Harvest21	ABC13944	659	6e-22	1 - 57	98	56 / 57	minus	ABC13944
Harvest35	U35_5952	673	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_5952 673 Hv_44K_v2
TGGGCACATGGCCCCCTTCTATGTGTTTCCCTGCGGACATGCCTTCCATGCGAATTGTTT
GATCGCCCATGTAACTCGCTGCACCAGCCAAGTGCAAGCTGAGAGAATACTGAACCTTCA
GAAGCAGCTAAGCTTGATGGACAGGAAAGCAGCAAAAGACAATGGCGGGACCGGGAACGG
TGAACCTACTGTCAGTAGTACGCCATCAGTCGACAAGCTGAGGTCACAGCTGGACGACGC
CGTGGCGAGCGAGTGCCCCTTCTGCGGCGACCTGATGATCAAGGAGATCTCGCTGCCTTT
CGTTCTCCCCGGAGAGTCGGCCGAGAAGGCCTCGTGGGAGATCAAGCCGCAGCCGGCGTC
CCAGAAGATCCTTCCCATGACCATGTCTATATGATCGACAACCCGGTCCTAGATTTTTTT
TTCCCGGGTGGATTTTGTTGTGACGGCTGTGCAGTTTCTGTATTTGTTGGCTGTTTGGGA
ACGAGAGAAGTGTTTCTTTCTTCATCATGCATAGAAAAAAAAGACCTGGGGTTGCCTCAC
ATGGGCCCTTCCTTGTACAGCCCAAGATTCCTGCCGTGTCGTGCCATTGGTTTTTGAAAG
ATGTAATTTCGTTTCGGTTGTGCCAACACATCACCAATAATGCAGTTGCGGTTGACAAAA
AAAAAAAAAAAAA

Homology of Contig U35_5952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08060.1	1001	2e-66	protein\|vacuolar protein sorting-associated protein 18, putative, expressed
Brachypodium v1_2	Bradi3g15520.1	992	2e-70
Arabidopsis v10	None