barSeed - Barley Seed Development Database

Probe CUST_18142_PI390587928

Source Contig U35_5957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18142_PI390587928	Hv_44K_v2	AAAGAAAAAATGGGATAGCTAGCACCGTGTTTTCATGATTTCATCCAACATTGGAATTCC	1088	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366576	3219	2e-24	3138 - 3197	100	60 / 60	plus	ABC13418
MLOC	MLOC_14042.7	1772	2e-24	1669 - 1728	100	60 / 60	plus	ABC13418
MLOC	MLOC_14042.8	1769	2e-24	1666 - 1725	100	60 / 60	plus	ABC13418
JLOC1	JLOC1_9560.4	1736	8e-25	1655 - 1714	100	60 / 60	plus
JLOC1	JLOC1_9560.3	1739	8e-25	1658 - 1717	100	60 / 60	plus
JLOC1	JLOC1_9560.2	1903	8e-25	1822 - 1881	100	60 / 60	plus
JLOC1	JLOC1_9560.1	1900	8e-25	1819 - 1878	100	60 / 60	plus
Harvest35	U35_5957	1165	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1165 bp)

>U35_5957 1165 Hv_44K_v2
CAGGACTCGAGATACAGGATCGTCCACAGAGACCTCAAGACAAGCAACATTCTTCTGGAT
AAGGACATGACCCCGAAGATTTCAGATTTCGGCATGGCGAGGATATTCGGTGGTGACGAC
TCTGAGATCAATACGCTTCGAGTGGTCGGAACGTATGGCTACATGGCTCCCGAGTACGCG
ATGGACGGGGTTTTCTCGGTGAAATCAGACGTGTTCAGCTTCGGTGTCATAGTGCTGGAG
ATCATAACCGGTATCAGGAACAGAGGCGTGTACAGCTACTCCAACCACCTAAACCTTCTA
GCACATGCGTGGAGCTTGCTGAGCGAGGGGAAGAGCCTGGAGCTGGTGGACGAGACCCTG
AAAGGGACGTTCGACTCGGAGGAGGTGGTCAAGTGCCTCAAGGTGGGGCTGCTGTGCGTG
CAGGAGAACCCGGACGACCGGCCGCTCATGTCGCAGGCGCTCATGATGCTCGCCGCCGCC
GACGCCGCGTCCCTGGCGGCCCCCAAGCAGCCCGGCTTCGCGGCGAGGCGAGCCGCGGCG
ACGGCGACGGTGACGGTGACGGAGGACACGTCGTCGAGCAGGGCCGACCGCAGCTTCGTG
GACAGCATGACCATCACCATGATCGAGGGCCGGTAGAGACCGTCATGGCTCGCTGATTTG
CGTACTACGTAGTCTAGCACTGAATTTTGAGTGAAAGTTGAGATGTGTTTTTGTGCAATT
GTACAGTGAAAAGAAATCAATGGATGGGTGAGGGTTGAAGTTGTCCGTCAGACCTTGCGG
ACGGCGCCGTCGCGGCCATGGGAGGATTCGCGGAAAAACACGGCCGCAACCGCAGATTCC
GAAACCGGCGACGGCGGGAGGAAAATGCCCCACGATGACTCCACCTTTTTATCTTTTGCG
GCGAAATTCCCGCATTACTTTGGGCCAGAGCACGGAAGGCCGTGGCACACGGCCCATGTC
TTCGGGAACATATTTTCCGCGCATCCTATGAGAAGTTTTGTTCCCTCAAAGAAAAGAAAA
AAAAAAGAGAACTTTTGTTTTTCTTTTGTGATGATGGCGGCCTCCCATGAGAAGATGTGA
TAATTCTTAAAGAAAAAATGGGATAGCTAGCACCGTGTTTTCATGATTTCATCCAACATT
GGAATTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42210.1	838	8e-82	protein\|serine/threonine-protein kinase receptor precursor, putative, expressed
Brachypodium v1_2	Bradi2g20687.1	863	1e-87
Arabidopsis v10	AT1G65800.1	847	3e-52	\| Symbols: ARK2, RK2 \| receptor kinase 2 \| chr1:24473166-24476523 FORWARD LENGTH=847