barSeed - Barley Seed Development Database

Probe CUST_18117_PI390587928

Source Contig U35_5982

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18117_PI390587928	Hv_44K_v2	GTCGTTGTTTAATTATTGTTAAGGACGAGCCGTGGAAACTGTTAGTTATTTCTTCAAGTA	1742	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359936	2864	7e-23	2623 - 2683	98	60 / 61	plus	ABC02596
JLOC1	JLOC1_40425.1	2893	4e-23	2676 - 2736	98	60 / 61	plus
Harvest35	U35_5982	1818	3e-25	1743 - 1802	100	60 / 60	plus

Contig Sequence (1818 bp)

>U35_5982 1818 Hv_44K_v2
AAACACGTAGATTCTTTAAGCACTCTTCAGTTCAAATATTGCTTTGCCCAAGATCTGCTA
GGAAAAGTCACAGCTGGGTGAAACAGAAGGAAACAGGAAATATTTATAGTCATCATCAGA
AAACAGTTATCATGGATGCTGATGCTGGCAGTAATAGGAGAAAAATAATTTCTTTTGTCG
GAGGCCTTGATTTATGTGGCGGACGCTATGATATACCTGGGCACCCTCTGTTTCGGACTC
TACAAACTTTGCACAAGGAGGATTATCACAATCCGAACTTTGCTGCAGTTGATGGCCGTG
GCCCAAGGGAACCATGGCATGACTTGCATTCAAAAATTGATGGTCCAGCAGCTTATGATG
TTCTGAATAATTTTCAGGAGCGCTGGTTGAAGGCATCAAAACGACATGCTATTAAAAAGT
TCGGAAAATCATATGATGATGCACTTCTCAGGACTGAAAGAATACCTGATATGATAAACA
TTAACGACACATCATATTTTAGCGACAACGATCCTGAGGCATGGCATGTTCAGGTGTTTC
GATCTATTGATTCCAACTCTGCCAAAGGATTTCCAAAGGATCCACGTGAAGCAACCAGAA
AGAATCTTGTTTGTGGAAAGAATGTACTAATTGATATGAGCATACACACAGCTTATGTGA
ATGCCATCCGGGCAGCCCAACACTTTATTTATATTGAGAATCAGTACTTCATAGGTTCCT
CATTCGATTGGGATTCAAACAAAGATATTGGGGCTAACAATCTGGTACCAATTGAAATTG
CTCTCAAAATTGCGACCAAAATTAAGATGAACCAGAGGTTCTCCGCATACATAGTGCTTC
CTATGTGGCCTGAGGGTAAACCAACTGGTCACATAGCACAAAGAATTCTTTACTGGCAGG
TTAGATTGGGCACCTTTGTCTGTGCCATGTTACTTGTGTATTCATTATGGAGCATCTCGG
TTCACTTATATTGAATCACTAATTTTCTGTCTTCGTCTGGCATTGTAAAAGAAAACAATG
CAAATGATGTATGAGATAATATATAGAGCCCTGAAAGAAGCAGGTTTGGATGAAATATAT
GAGCCTCAGGATTATTTGATCTTCTTTTGTCTTGGCAATCGTGAAGTTTCTGACAGTCCT
AGCGCTTCAAGCACAGCAGACAGTCCTCAGGAACAAGCTAGGAAAAATAGGAGGTTCATG
GTGTACGTACATTCAAAGGGCATGATTGTGGACGATGAATATGTGATAATTGGATCAGCT
AACATCAACCAAAGGTCCATGGAAGGAACCAGAGATACTGAGATTGCTATGGGAGCGTAT
CAACGACAGTACACCTGGGCAAATAAGATTTCTGCCCCTCGTGGACAGGTTTACGGGTAC
AGAATGTCGCTCTGGGCTGAGCATATCGGAGCTATCGAGGAAGACTTCAACCATCCAGAA
AGCATAGAGTGCATGAGGCGGGTTCGACATCTCGGGGAACATAACTGGGATCAGTTCGTT
GCCAATGAAGTGACTGAGATGAGAGGCCACCTCCTGAAGTACCCCGTAAGTGTTGACCGT
GAAGGCAAGGTGAAACCCTTGCCAGGATGTACGACATTCCCATACATGGGCGGGAACATT
TGTGGCTCTGTCCCCTTTACCCTCATCCAGGATAACCTCACAATATGAATTTGGTTATGC
AAGTATGTATAGTTGCTAGTGATTTCTGGGGTAGCCTGGACAATAAAATTGCAATCGTAT
ATGTCGTTGTTTAATTATTGTTAAGGACGAGCCGTGGAAACTGTTAGTTATTTCTTCAAG
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_5982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g38060.2	1047	protein\|phospholipase D, putative, expressed
Brachypodium v1_2	Bradi3g31637.1	979
Arabidopsis v10	AT2G42010.1	1083	\| Symbols: PLDBETA1, PLDBETA \| phospholipase D beta 1 \| chr2:17533018-17537990 REVERSE LENGTH=1083