barSeed - Barley Seed Development Database

Probe CUST_18116_PI390587928

Source Contig U35_5983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18116_PI390587928	Hv_44K_v2	CTTGAGTGTATCATCCTTCAATCAGAAATAAATGGTGCATCTTGATCTTTGCCATCAAAA	1444	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372159	1404	3e-22	1213 - 1268	100	56 / 56	minus	ABC13481 ABC14213
MLOC	MLOC_37223.1	2727	3e-22	1591 - 1646	100	56 / 56	minus	ABC13481 ABC14213
MLOC	MLOC_37222.1	1374	3e-22	715 - 770	100	56 / 56	minus	ABC13481 ABC14213
JLOC1	JLOC1_24078.1	2799	1e-22	1152 - 1207	100	56 / 56	plus
JLOC1	JLOC1_24077.1	2229	1e-22	718 - 773	100	56 / 56	minus
Harvest35	U35_5983	1517	3e-25	1445 - 1504	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_5983 1517 Hv_44K_v2
TCGAGCACTGTTGGCCTAGCTCGAACGACTCGGAGGAGACCGCCTTCCCCACCCACCGCC
CCCCGAACCCGAACGTCTTTCCCTCGCCGCCCGCCCCTCCGAATCCGCGCCAAAACCCCC
CGCAGAATCGGCCGCTCCCGCCTCCCCGAGCGAGCGCGCGCAATGGGAGCCGCCTGCGAC
GACGCCGTCCAGCAGCTCGCCCGCCTCCTCGACCAAGTCGAGGAGCCGCTCAAGAAGACG
TTCCAGAATGTGCACCAGGGCTATCCAACAGAGACACTGGTGCGCTTCCTTAAAGCCAGA
GAGTGGCATGTAACTAATGCTCATAAAATGCTTGTAGATTGTCTGAATTGGAGGATACAG
AATGAAATCGACAGTATACTGGAGAAACCTATAGTCCCAGTAGATTTGTATAGATCAATA
CGAGAATCACAGCTTGTTGGGTTATCGGGATACTCAAAGGAGGGCGTCCCAGTATTTGCC
TTTGGTGTTGGACAGAGCACATACGACAAAGCTTCGGTCCATTACTATGTGCAATCTCAT
ATTCAGATCAATGAATACCGTGATCGTATCATTCTGCCTATGGCGACGAAGAAGTTTAGG
CGACCTATAACCAGCTGTATAAAGGTTCTTGATATGACTGGTTTGAAGTTGTCAGCACTC
AGCCTATTGAAGATTTTAACTGCAATATCTGCTGTCGATGAACTGAATTACCCTGAAAAG
GCCGAGACCTATTATATTGTAAATGCTCCATACATATTCTCAGCGTGTTGGAAGGTTGTG
AAACCTCTACTGCAAGAGAGGACGAGAAAGAAGGTTCATGTTTTGAGTGGCCGTGGGAAA
GATGAGCTCCTAAAGATCATGGACCATTCCTCCATCCCCCATTTCTGTCGACGCGAGGGT
TCATCAAAAGCTTCGTTGAGCGGCGTCGATGATTGCTTCTCGCTCGACCACCCCTTCCAC
CAAGAGCTCTACCATTACATCGAGCAGCAGGCGTTGAACCAGGAACTCATCAAGCAGGGT
TCTTTGCATGTAGACATCCCCGAACAAGACCCCGAGGACGCCATGATTGTGGAGGTCATC
CAGGCCGAGTTTCACAAGCTCAGTGAGCAGGATGGGTCTGCCAATGGCGACCATAAATAA
CGGTGTCCGTGTAAGATGTCAGCGACGTGGCATGACAAATGTGTGTTGCTGTGATGAAAT
TGATGATCCATTTCGGTATTTGCGACGTTTGCTTGACCGGCCTGCTGATGTTTGTGGGGT
GACCAGTTCCATGGTGCAAGACTGAGGTAGAAGAAGCAACGGATGTATACTAGATAGAAA
TAACCACCTATTCACCTGATGTATACTTTGGCAATGTACTGTCATATGTATGTCCTGTAA
GCTATGAGTAAATCATCCTGTAAGCTAGGACTAAATCATCCTGTAACATGGATGCTAAAA
TAATCTTGAGTGTATCATCCTTCAATCAGAAATAAATGGTGCATCTTGATCTTTGCCATC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_5983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10650.1	328	7e-175	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi1g36420.1	330	0.0
Arabidopsis v10	AT5G47730.1	341	4e-141	Sec14p-like phosphatidylinositol transfer family protein \| chr5:19334592-19336618 REVERSE LENGTH=341