barSeed - Barley Seed Development Database

Probe CUST_18115_PI390587928

Source Contig U35_5985

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18115_PI390587928	Hv_44K_v2	GTGGGATCAGATCTAAGCCAAACAACAGTTTTACCCTCAACACGAGCATAATTTGTTAAA	1884	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.290	7.088	1.592	0.658	0.473	0.421
Raw	95.170	164.826	31.646	20.818	3.196	3.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80490.1	2027	6e-24	53 - 111	100	59 / 59	minus	ABC45316
MLOC	AK361347	1953	3e-22	1897 - 1952	100	56 / 56	plus	ABC45316
JLOC1	JLOC1_53592.1	2614	3e-24	61 - 119	100	59 / 59	minus
Harvest21	ABC45316	660	3e-25	14 - 73	100	60 / 60	minus	ABC45316
Harvest21	ABC22939	752	3e-25	693 - 752	100	60 / 60	plus
Harvest35	U35_45917	660	3e-25	14 - 73	100	60 / 60	minus
Harvest35	U35_5985	1944	3e-25	1885 - 1944	100	60 / 60	plus

Contig Sequence (1944 bp)

>U35_5985 1944 Hv_44K_v2
ATTATTGCAGGAGATGAGTCCACGAACCCGCGTCCTCTTCCCGTTCCATTTCCACAGCAG
CCAGCTCCCTCCACTTGGTCCGGGGGCGGGCATCCATGGACTCTTCCTCCGAGGCGCCGC
TGCTGCTCAGCAGGGGGAACAGTCACAAGGAGGTGCCCCATGAGGCGGGAGGCAAGCGGC
AGCGGTGGTGGAGGGAGGCGGCGGAGGAGTCCGGCCGGCTGGCTGCGCTGGCTGCGCCGA
TGATCGCTGTGGCGCTGCTGCAGCTGATGATGCAGCTCATCTCCACCGTCATGGTGGGGC
ACCTCGGCGAGGTCGCGCTTGCGGGCGCCGCCATCGCCAACTCCCTCACCAACGTCTCCG
GTTTCAGCGTCCTCATAGGACTGGCATGCGGATTGGAAACTATTTGTGGGCAGGCCTATG
GAGCAGAACAGTATCATAAGTTATCCTTATATACCTACAGGTCCATCATTGTACTTCTTA
TTGTGAGTGTGCCCATCGCCATTGTATGGGTTTTCATTCCGGAAGTACTTCCTCTCATAG
GTCAGCAACCAGAAATTGCAAATGAGGCTGGGAAATATGCATTATGGCTTATCCCTGGTT
TATTTGCCTTCAGTGTTGCTCAATGCTTTTCAAAGTTTCTGCAGTGTCAGAGCCTCATCT
TTCCTATGGTTCTTAGCTCCATGATCACACTCGCTGTATTTATTCCTCTGTGTTGGTTCA
TGGTTTATAAAGTTGGTATGGGTAATGCTGGAGCTGCTTTATCCGTCAGCATCTGCGATT
GGGTTGAAGTGATTGTCCTTGGTCTTTACATTAAGTTCTCGCCTTCTTGTGAGAAAACAC
GTGCTCCACTCACGTGGGAAGCTTTTAAAGGAATTGGCAGTTTCATGCGTTTGGCTGTAC
CGTCGGCTCTTATGATTTGCCTTGAGTGGTGGTCTTACGAGCTGCTTGTTCTGCTTTCTG
GGATCTTACCAAATCCAGCACTTGAAACTTCTGTGCTTTCTATATGCATATCTACAGTGG
TACTGTTGTACAATCTTCCTTACGGTATTGGAACAGCTGCAAGTGTTCGTGTCTCGAATG
AACTAGGTGCTGGCAACCCAGAAGGTGCCCGCTTGGTGGTAGGTGTTGCTTTGTCTATTG
TAGTTTGTTCAGCAGCACTGGTGAGCACAACTCTTCTCGCATCGCGTCACTTCATTGGAA
TTGCATTCAGCAATGAGGAGGAGGTTATAGATTATGTCACCAGAATGGTGCCCGTACTTT
CCATTTCAGTTATTACAGACAGCCTCCAAGGAGTCCTTTCAGGTGTTTCTCGGGGCTGTG
GATGGCAGCATTTAAGCGCGTACGTTAACCTGGGTGCATTCTATCTTGTTGGGATTCCAG
TTGCACTCTTTTTTGGTTTTACAATGCAACTAAGAGGAATGGGATTTTGGATTGGCATGA
TAGCTGGTGGAGCTACACAGGTCACTCTCCTATCTGTGATAACTGCTACTACAAAATGGG
ACAAGATGGCCGACAAGGCTAAGGAGAGAGTATTTGAAGACAGGCTTCCAACACAACAAT
AAGACTTGAAGAACTGCCATGTCAAAATTTTGATGAGCTAAAGAATGAGAGAATTCTAAT
TACTTTTGATCTTTGAGAAAGGCATCATCGATGTCCTTGTCACGCGTGAAGAATTTTTTT
ACACAACTGGCTCTGTTCGGCATGATGTANTTTGGTGGTGGACTGGTGGTGTTTTACTGT
TATTTTCTTTTTCTTGGTATAGATTGTTTTATTGTTTTGTGTGGTGCCTATCTTCTCTTG
TATTGGGTTCTTTTTGTGGGCGAACTTTGTATTACTTAATCACTGTCGGGCTTACATTCT
TCGTTACAAAGATCGACAGTCTTAGTGGGATCAGATCTAAGCCAAACAACAGTTTTACCC
TCAACACGAGCATAATTTGTTAAA

Homology of Contig U35_5985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g31980.2	503	0.0	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi2g12080.1	487	0.0
Arabidopsis v10	AT1G15170.1	481	2e-161	MATE efflux family protein \| chr1:5220690-5222756 FORWARD LENGTH=481