barSeed - Barley Seed Development Database

Probe CUST_1810_PI390587928

Source Contig U35_47279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1810_PI390587928	Hv_44K_v2	CTATCCTAAAGATGAAGCAAATATTGCTATTACAAGATGTGGTGTGGATGCTGATCTCGT	544	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.316	0.616	1.547	1.323	0.855	1.083
Raw	16.573	45.903	106.757	136.945	32.822	45.596

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_789.1	889	2e-24	75 - 134	100	60 / 60	minus	None
MLOC	AK375527	2052	3e-21	713 - 769	98	56 / 57	plus	ABC37331
JLOC1	JLOC1_482.1	883	8e-25	747 - 806	100	60 / 60	plus
Harvest21	ABC48172	604	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_47279	604	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_47279 604 Hv_44K_v2
GGTCTAAACTACACGCCGTGGCACAGGCGCGGCAACGCAGCGCAATGGCGGACCGGGATA
GCGACAGCGATGACAATGCTAAGTTTGAGTGGGAAAGTGATGGTGAGGCTGAGCCTTCAT
CAGCTCCGGCTTTCAGGAACTCAGATGCTCCTGGCCCGTCCACGCTGGATTCTAATGGGC
GAGCCAACGAGGAAGCGCCATCTACTGCTTTAATTGAGGAATATGTANCAATGGGTTTCC
CAAAAGAGATAGTCCTGAAGGGCATGAAAGAGATTGGGCATAGCGATGCAGATGCATTGC
TCGAGCTAATTCTCACATATCAGGCACTAGGTGCTGATGATACAGTGGGTAACTGCTCTA
CTTCTGGCTGCGCCCCTCATAGTGTTGAAGAAGATGATGATGATGATCTTGATTTTGAGA
ATTGGGATGACAAGAATGATGATGTTGCTGGTAGAGAGCCCAACTGTGATGATCCTGGTG
ATGAGGATTTTCTACGAGAGATGTCACAGAAAGACAAGAAGATCAACTCATTAGTAGGCA
TGGGCTATCCTAAAGATGAAGCAAATATTGCTATTACAAGATGTGGTGTGGATGCTGATC
TCGT

Homology of Contig U35_47279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g05680.1	589	3e-68
Arabidopsis v10	None