barSeed - Barley Seed Development Database

Probe CUST_18101_PI390587928

Source Contig U35_2003

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18101_PI390587928	Hv_44K_v2	TGATGTAACAGTAAGATGTCCGCTATGTTAAATGAAGACGTGTCATTTTGCCTCCCCAAA	2919	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	1.509	0.899	1.018	0.629	0.577
Raw	705.411	962.612	521.581	952.843	195.487	199.571

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12653.1	2865	1e-23	2597 - 2654	100	58 / 58	plus
Harvest21	ABC05247	2898	3e-25	2825 - 2884	100	60 / 60	plus	ABC05247
Harvest35	U35_2003	2994	3e-25	2920 - 2979	100	60 / 60	plus

Contig Sequence (2994 bp)

>U35_2003 2994 Hv_44K_v2
GGGCGAATTGGGCCCTCTTCATAATGCTCGAGCGGCCGCTCGACTCACCCTTGGATGAGC
ATTTGGTGGCAGGGCTACCCCCTCTTGAGCCATACGCTCGCTTGTTTCATAGATACTATG
CAATTGCCACACCAAGTGCTACACAAAGATTGCTTTTTGGTCTTCTTGAAGCACCACCAT
CATGGGCTCCAGATGCACTTGATGCAGCAGTTCAGCTTGTTGAACTCCTTCGGGCAGCTG
AAGATTATGCTACTGGCATGCGGCTTCCAAAAAATTGGTTGCATCTTCATTTCTTGCGTG
CGATTGGAACTGCAATGTCTATGAGGGCTGGTATTGCTGCCGATACAGCTGCTGCGTTGC
TTTTTCGCATACTATCCCAACCAACGTTGCTTTTTCCTCCACTAAGGCATGCTGAAGGAG
TTGAAGTGCAACATGAACCACTGGGTGGCTATGTATCATCATACAAAAGACAGCTGGAAG
TTCCTGCATCTGAAACCACAATTGATGCCACTGCACAAGGCATTGCTTCCTTGCTGTGTG
CTCATGGTCCTGATGTTGAGTGGAGAATATGTACCATCTGGGAAGCTGCCTATGGTTTGT
TACCTCTGAATTCATCAGCAGTTGATTTGCCCGAAATCGTTGTAGCTGCTCCGCTTCAGC
CACCTACTTTGTCATGGAGCCTATACTTGCCACTGTTGAAAGTATTCGAGTATCTACCTC
GTGGAAGTCCATCTGAAGCATGCCTTATGAGAATATTTGTGGCAACAGTTGAAGCTATAC
TCAGAAGAACTTTCCCTTCGGAAACCTCTGAATCATCTAAAAGACCAAGAAGTCAATCCA
AGAACCTTGCTGTTGCTGAACTCCGTACAATGATACATTCACTCTTTGTTGAATCATGTG
CTTCAATGAACCTTGCTTCCCGGTTGTTGTTTGTTGTATTAACTGTTTGCGTCAGTCATC
AAGCTTTGCCAGGGGGCAGCAAAAGACCAACGGGTAGTGAAAACCATTCTTCTGAGGAGG
CCACTGAGGACCCAAGATTAACCAATGGAAGAAATAAGGTCAAGAAGAAACAAGGGCCTG
TTGGTACATTTGACTCGTATGTGCTGGCTGCTGTTTGTGCCTTATCTTGTGAGCTTCAGC
TGTTCCCTATCCTTTGCAAGAGTGCAACAAACTCAAAAGTAAAAGACTCTATAAAGATCC
TGAAGCCTGGAAAAAACAATGGGATCAGTAATGAGCTACAGAATAGCATTAGCTCAGCAA
TTCTCCATACTCGTAGAATTCTTGGCATCCTGGAAGCTCTTTTCTCCTTGAAGCCATCAT
CAGTTGGTACCTCCTGGAACTATAGTTCAAATGAGATAGTTGCAGCGGCTATGGTTGCCG
CTCATGTTTCTGAGTTATTTCGCCGGTCGAGGCCATGCCTAAATGCACTATCTTCACTGA
AGCGATGTAAGTGGGATGCTGAGATTTCTACCAGGGCATCATCCCTTTACCATTTGATCG
ATTTGCATGGTAAAACTGTGTCCTCCATCGTGAACAAAGCTGAGCCTCTAGAAGCTCACC
TGACTTTTACATCAGTAAAGAGAGATGGTCAACAACACATTGAGGAAAACAGCACCAGCT
CATCGGGTAATGGCAACTTGGAAAAGAAGAATGCTTCAGCCTCACACATGAAAAATGGTT
TTTCAAGACCACTCTTGAAATGCTCAGAAGAGGCTAGGCGAAATGGTAATGTTGCAAGTA
CATCCGGGAAAGTTCCTGCAACTTTACAGGCTGAAGCATCTGATTTGGCTAACTTCCTTA
CCATGGATAGAAATGGGGGTTATCGAGGCTCTCAGACTCTCCTAAGTTCTGTTATCTCAG
AAAAACAGGAATTATGCTTCTCTGTTGTCTCATTGCTCTGGCATAAGCTTATTGCATCTC
CTGAAACGCAGATGTCTGCAGAAAGTACATCAGCTCATCAAGGTTGGAGAAAGGTTGTAG
ATGCCCTTTGTGATGTTGTTTCAGCCTCACCAGCCAAGGCTTCAACTGCTATTGTTCTGC
AGGCTGAGAAGGACCTACAGCCCTGGATTGCTCGAGATGACGAGGAAGGTCAAAAGATGT
GGAGAGTCAACCAGCGAATAGTTAAACTGATAGCTGAGCTTATGAGGAACCATGATAGCC
CAGAAGCATTGATAATTCTTGCTAGTGCTTCAGACCTTCTGCTTCGTGCTACAGATGGGA
TGCTTGTTGATGGTGAAGCTTGTACCTTGCCTCAGTTAGAGCTCCTGGAAGTAACTGCTA
GAGCTATTCATCTCATCGTTGAATGGGGAGACCCAGGTGTAGCAGTTGCTGATGGCCTCT
CAAATCTGTTAAAGTGCCGTCTATCGCCTACCATCCGCTGCCTCTCCCACGCTAGCGCAC
ACGTACGAGCGCTCAGCATGTCCGTCCTCCGTGACATCTTGAACAGTGGACCACTAGGTT
CCAGTAAGACCATTCAAGGCGAGCAACGGAACGGCATCCAAAGCCCAAACTACCAATGCG
CGGCAGCAAACACGGTGAACTGGCAAGCGGATGTCGAGAGATGTATAGACTGGGAAGCCC
GCAGCCGCCGTGCCACCGGGATGACCCTCGCCTTCCTCACCGCTGCTGCTAACGAGCTCG
GCTGCCCCCTTCCTTGCTGACAAGGCCATATTTGAAGCTGACAATCAGCAACACTTGACA
GTTGGTGCGAGCAGTTGCTGCATGGTCAGCGAGCAGGATGGCTAATTAATCCCTTGCTCA
AGGATGGCTTTCCATTCCCAGTCTGCCCCCCATGATGTGATGTATATTAGCTGATGTTCC
CAATCATACGGAGCTTTGCTCCCGCGGTGTGATTTTAACTTGCAATCTGACGTTAGATGT
TCAAGCATATTGAACTGCTTGTGCTGTAACTTGTATTCATGATGTAACAGTAAGATGTCC
GCTATGTTAAATGAAGACGTGTCATTTTGCCTCCCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g08700.6	1161	protein\|GIGANTEA, putative, expressed
Brachypodium v1_2	Bradi2g05226.1	1156
Arabidopsis v10	AT1G22770.1	1173	\| Symbols: GI, FB \| gigantea protein (GI) \| chr1:8062398-8067447 FORWARD LENGTH=1173