barSeed - Barley Seed Development Database

Probe CUST_180_PI390587928

Source Contig U35_19586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_180_PI390587928	Hv_44K_v2	TCTACAAGATTCATTGATTGAGAGTAATCGGTTGGAAGTAGTTCAATGCGTCCCTTTTTT	1517	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.601	1.754	1.082	0.917	0.517	0.823
Raw	591.577	1047.004	545.400	718.059	144.355	249.109

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10892.1	1941	2e-24	86 - 145	100	60 / 60	minus	ABC10983
MLOC	MLOC_10892.2	1903	2e-24	86 - 145	100	60 / 60	minus	ABC10983
MLOC	MLOC_10892.3	1954	2e-24	36 - 95	100	60 / 60	minus	ABC10983
MLOC	MLOC_10892.4	1960	2e-24	36 - 95	100	60 / 60	minus	ABC10983
JLOC1	JLOC1_7164.4	1877	8e-25	1696 - 1755	100	60 / 60	plus
JLOC1	JLOC1_7164.3	1826	8e-25	1645 - 1704	100	60 / 60	plus
JLOC1	JLOC1_7164.2	1829	8e-25	1648 - 1707	100	60 / 60	plus
JLOC1	JLOC1_7164.1	1828	8e-25	1647 - 1706	100	60 / 60	plus
Harvest21	ABC10983	1659	3e-25	1518 - 1577	100	60 / 60	plus	ABC10983
Harvest35	U35_19586	1659	3e-25	1518 - 1577	100	60 / 60	plus

Contig Sequence (1659 bp)

>U35_19586 1659 Hv_44K_v2
GGTTGAAACTCGAGGCTCCAGCGAATTCGGGTCGGGAGATCGGAGGGGATGGATCCCGTG
GAGGCGGAGGAGCAGCAGACGGAGCCGCCGGACGACGAGGCCTACGCCGAGGCCGATCCC
ACCGGCCGCTTCATCCGGTACGATGAGATCTTGGGATCGGGTGCCGTCAAAACAGTCTAC
AAGGCCTTCGATAAGCTGGAGGGCGATGAGGTTGCATGGTGCCAAACACGGATTGATGAT
TCTGTCATGGGTTCCTCAGAGAAGATGGCACAACTGAATACGGAGATCGGGCTGTTGAAG
ACGCTGAGGCACAAGAACATTCAGAAGTTGTTTGCCTCATGGATTGATGAGGACAAGAAG
ACAGTTAACATCATCACAGAGCTCTGCACATCCGGCAGTTTGAGACAGTTCCGTAAGAAG
CACAATAAAGTTGGTATGAAGGCTATGAGAGGATGGGCAATACAGATATTGGCAGGGCTG
GAATATCTTCACAGTCAGGAGCCAGCCATTATTCATAGGGACTTAAAGTGTGACAACATA
TTCATAAACGGTCATGATGGACAAGTGAAGATTGGTGACTTTGGTTTGGCGACATTTTTG
CATCAACGGAAAATGAGAAGTATCAAAGGCACATTAGAGTTTATGGCACCAGAACTCTTC
ACTGGGAATTACAACGAGTTGGTGGATATATATTCATTTGGGATGTGCATGCTTGAAATG
GTGACATGTGAATATCCATACAGTGAATGCCAAGGCAAGCCATGGATATACAAGAAAATT
TCTCAAGGTATAAAGCCAGATGTTCTTTCCAAGGTTGAAGATGCAGAAGTAAGAGGTTTC
ATAGAAATCTGTTTGGCTCCAGTAACTGAAAGACTTTGTGCAAGTGAGCTCTTGAAGAAC
TGTTTCCTCCAGAAAGACAAGCCTATCCCGGTGCCTCCTATTTCAGTCTCTCTGGTCTCG
AGTGTGACTGGAGATGGGCAGCAGTCTGCCAGTTTGATGCTATGGAAGGGTGAATTCTTA
CTGAAAGGCGATATGCATGTCACCGGACCATATTAATTTATCGCTAAGATTTCCTGATCC
GAGCGGTTGTTTTAAGAATGCTGAGTTCCCGTTTGATGTGGACCAAGATACCAGCCTTTC
TGTGGCTTTGGAAATGGTCGACGCTTTTGGATTGCCGCAAGGGAACATGCAAAGCATAGC
GCAGCTGATTGAGGTGTTCTTGCTCATCCTGATCCCTGAGTGGGTGCCCTGTGTTGCCGT
CGGACGGGTGGTTGTGGTTCCTGAGAGTGCACACAGCTGCATCACCAAAAGAATCATGAA
CTGCAGGCAGCTCAGATTGGCCGTCCTAGGATAGTTCTGCTTTCCCCAAGCTAGTGTATC
TTCAGGTTTTTTTGTTTTTGTTTAGTCAGATGAATTAGGCCGTGCTTCAGCCTCTGGTGT
GGCTCATATTACAGCACCCACTCGATGTGCTGCTAGACACGGAATTTTTCGTCGATGATG
ATGAAAGTTAGCGCAGATCTACAAGATTCATTGATTGAGAGTAATCGGTTGGAAGTAGTT
CAATGCGTCCCTTTTTTTTTTCTTTAAATTGTTGTGTTCAGTTTGATTTCAGTGCTAAAA
AAATTCTGGTTTCCAGCTGANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_19586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06490.1	418	5e-158	protein\|STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi4g41940.1	367	1e-143
Arabidopsis v10	AT3G18750.1	567	9e-115	\| Symbols: WNK6, ZIK5, ATWNK6 \| with no lysine (K) kinase 6 \| chr3:6454307-6456830 REVERSE LENGTH=567