barSeed - Barley Seed Development Database

Probe CUST_18097_PI390587928

Source Contig U35_2005

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18097_PI390587928	Hv_44K_v2	GTTCTTGAGCTGTGTTTTGCTGGTGATTTTGTGTTTCAAGAGCCTGAAATCTGAAGGAAG	2494	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.296	2.138	1.265	0.871	0.901	0.802
Raw	24.933	26.431	13.688	14.132	2.847	3.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53061.1	2930	7e-23	1 - 57	100	57 / 57	minus	ABC06481 ABC42227
JLOC1	JLOC1_34050.1	3075	8e-25	2948 - 3007	100	60 / 60	plus
Harvest21	ABC06481	2570	3e-25	2490 - 2549	100	60 / 60	plus	ABC06481
Harvest35	U35_2005	2575	3e-25	2495 - 2554	100	60 / 60	plus

Contig Sequence (2575 bp)

>U35_2005 2575 Hv_44K_v2
GAGAAGATTGTGGGGATGATGAAGAGCGAGGAGCTCTTTGCTTCCAAGGTGGCCCCATTA
TCCTTTCTCAGATTGAGAATGAGTATGGGCCAGAAGAGAAAGAGTTTGGGGCTGCTGGCA
AGTCATACAGTGACTGGGCGGCAAAGATGGCCGTGGGATTGGACACCGGTGTGCCGTGGG
TGATGTGCAAGCAGGAAGACGCACCAGATCCAGTGATAAACGCATGCAATGGTTTCTACT
GTGATGCATTTACACCGAACACGCCTTCCAAGCCTACCATGTGGACTGAAGCTTGGACTG
GTTGGTTTACCGAATTTGGTGGGACCATCCGTAAACGACCAGTTGAAGATCTTTCATTTG
CTGTTGCTCGCTTTGTGCAGAAGGGTGGTTCTTTTATCAACTACTACATGTACCATGGCG
GAACAAATTTTGGGCGCACCGCTGGAGGTCCCTTCATCACCACAAGCTACGATTATGATG
CTCCACTTGATGAATATGGACTTGCAAGAGAACCAAAGTATGGACATCTTAAAGAACTTC
ATAAAGCTATCAAGTTATGTGAGCAGGCATTGGTTTCTGTTGATCCAACTGTGACTTCCC
TTGGAAGTATGCAAGAGGCCCATGTCTACCGATCTCCATCTGGTTGTGCAGCTTTTCTCG
CAAACTATAATTCCAACTCTCATGCAAAAATTGTCTTCGACAATGAGCATTATAGTCTCC
CACCTTGGTCAATCAGCATCCTTCCTGATTGCAAAACAGTTGTTTATAACACTGCAACAG
TTGGTGTTCAGACATCTCAAATGCAAATGTGGTCCGACGGGGCCTCTTCAATGATGTGGG
AGAGGTATGATGAGGAGGTTGGTTCACTAGCAGCTGCTCCGTTGCTCACCACAACTGGTC
TACTCGAACAGCTTAACGTCACGAGAGACACCAGTGATTATCTTTGGTACATGACCAGTG
TGGATGTAAGCCCCTCGGAGAAGTCTCTACAAGGTGGCAAGCCTTTGTCCCTCACTGTGC
AGTCTGCTGGCCATGCCTTGCATATCTTTGTCAATGGACAGCTACAAGGTTCTGCTTCTG
GAACCAGGGAAGATAAAAGAATTTCATACAAGGGTGATGTTAAACTTCGTGCCGGTACTA
ACAAAATTTCACTGCTGAGTGTTGCTTGTGGGCTGCCGAATATCGGGGTGCATTATGAGA
CATGGAATACTGGTGTCAATGGCCCTGTTGTGCTTCATGGTTTGGATGAAGGTTCGCGAG
ATCTGACCTGGCAGACATGGACCTATCAGGTTGGTCTGAAAGGTGAACAAATGAACCTGA
ACTCCTTAGAAGGTGCAAGTTCAGTTGAATGGATGCAAGGATCATTGATTGCACAAAACC
AAATGCCATTGGCATGGTATAGGGCATACTTTGATACTCCAAGTGGCGATGAACCACTGG
CTCTGGATATGGGTAGCATGGGTAAGGGACAAATCTGGATAAACGGACAAAGCATTGGAC
GGTACTCGTTAGCATATGCAACTGGGGACTGCAAAGATTGCAGTTACACTGGGTCATTCC
GAGCAATCAAATGTCAAGCAGGTTGCGGTCAGCCCACACAACGTTGGTATCATGTACCAA
AATCCTGGTTGCAACCGACTAGAAATCTGTTAGTTGTTTTCGAGGAACTTGGCGGGGATA
CTTCGAAGATTTCCCTTGTGAAGAGATCAGTCTCAAATGTCTGTGCTGATGTATCAGAGT
TTCATCCAAGTATCAAGAACTGGCAAACTGAGAACTCAGGGGAAGCTAAACCTGAGTTGC
GCAGGTCGAAGGTACATCTAAGATGCGCACCTGGGCAGTCTATTTCTGCCATCAAGTTTG
CAAGCTTCGGGACACCTCTTGGGACTTGCGGAAGTTTCGAACAAGGGCAGTGCCATTCAA
CCAAGTCACAGACTGTTCTTGAGAATTGCATCGGGAAGCAGAGATGCGCCGTCACCATCT
CCCCCGACAACTTCGGCGGAGACCCCTGCCCGAATGTGATGAAGAGGGTGGCGGTCGAGG
CGGTATGCTCTCCTGGTACATAGGCAACTCCTCCGACTATACTAATTTAAAGACGACACG
GCCTTGTGCGTGACCGATTGAGCACACGGGAAGTGATCCGGAGGTGAAGTTCAACTGTAA
AGTACTACCGAGTCGGCGTAGACGTGGCTGGAGGATTTAGAAGGCCATTTGCCATTTCTA
GCATTGTGATTTCAGATTAGGATTGGTGCTCTGCTCTGTATCTCCATGAATTGTTCAAAA
GCGACCAGCTGGTAGTCGAGGCTGGTCCTGGAATGGAGTGTAGGGGGGAGTAAGGTGCAG
AAGATTATTTTGCTGGTGTTGCGGGTATGCATGGGCTGTGTGTCATCTTTCTTGAAGAAG
AGAAGATGTTGTATCCTTCCTTTTGAAAATACTTGTTTTTAATCGTGCGTTCCGTGAGCA
AAAAAAAAAAAAAAAAGCTGGTCGCTTGCTCTTGGTTCTTGAGCTGTGTTTTGCTGGTGA
TTTTGTGTTTCAAGAGCCTGAAATCTGAAGGAAGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g06940.1	842	protein\|beta-galactosidase, putative, expressed
Brachypodium v1_2	Bradi1g74050.1	840
Arabidopsis v10	AT4G36360.1	856	\| Symbols: BGAL3 \| beta-galactosidase 3 \| chr4:17176840-17181143 REVERSE LENGTH=856