barSeed - Barley Seed Development Database

Probe CUST_18095_PI390587928

Source Contig U35_2006

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18095_PI390587928	Hv_44K_v2	TGTACCGGTGACTATTTCCCCTTCTGTATGTCATGTACCAGAAATTGGCTATGGAATGCG	2524	GeneList: red MasterList: Inositol_phosphorylase_phosphatase_and_kinase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.224	1.601	1.159	0.813	0.276	0.296
Raw	132.391	274.663	172.136	192.084	22.491	26.871

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51052.1	2949	2e-24	24 - 83	100	60 / 60	minus	ABC05912 ABC05913
MLOC	MLOC_51052.2	2891	2e-24	24 - 83	100	60 / 60	minus	ABC05912 ABC05913
MLOC	MLOC_51052.4	2655	2e-24	12 - 71	100	60 / 60	minus	ABC05912 ABC05913
MLOC	MLOC_51052.5	2743	2e-24	4 - 63	100	60 / 60	minus	ABC05912 ABC05913
MLOC	MLOC_51052.3	2864	2e-24	24 - 83	100	60 / 60	minus	ABC05912 ABC05913
JLOC1	JLOC1_32576.6	2954	8e-25	2787 - 2846	100	60 / 60	plus
JLOC1	JLOC1_32576.5	2841	8e-25	2674 - 2733	100	60 / 60	plus
JLOC1	JLOC1_32576.4	2876	8e-25	2709 - 2768	100	60 / 60	plus
JLOC1	JLOC1_32576.3	2927	8e-25	2760 - 2819	100	60 / 60	plus
JLOC1	JLOC1_32576.2	2829	8e-25	2662 - 2721	100	60 / 60	plus
JLOC1	JLOC1_32576.1	2696	8e-25	2529 - 2588	100	60 / 60	plus
Harvest21	ABC05913	533	3e-25	37 - 96	100	60 / 60	minus	ABC05913
Harvest21	ABC05912	2660	3e-25	2525 - 2584	100	60 / 60	plus	ABC05912
Harvest35	U35_2006	2660	3e-25	2525 - 2584	100	60 / 60	plus

Contig Sequence (2660 bp)

>U35_2006 2660 Hv_44K_v2
GGATCCCTCTATGACGGCGAATGGGATAAAAGCAAAATGACCGGGAGAGGAATGATCCAG
TGGCCCTCAGGCGCATCCTATGAGGGCGACTTCCGTGGAGGTTTCATCGACGGAACAGGC
ACTTTCAAGGGGGTCGACGGCTCGGTTTACAAAGGTTCTTGGAGGATGAACAAAAAGCAG
GGAATGGGGACAATGGTTTACTCAAACTCTGACAGTTATGAAGGTCTGTGGAACGAGGGT
TTGCCGGATGGATATGGTAAATATACATGGGCTGCTGGCAACATCTACATTGGTAGCTGG
AAGTCAGGTAGCATGAACGGCCGAGGCGTAATGCAGTGGGTAAATGGTGATACTCTTGAC
TGTAATTGGCTCAATGGGCTGGCTCATGGCAAAGGTTACTGCAAATATGCGTCAGGGGCA
TGTTACATTGGTACGTGGGATAGGGGAGTCAAGGATGGCCATGGCATATTTTATCAACCA
GGAAGTAAAATACCTTGTAACCTTGAAGTTTCTGAGTGTGCAACAAATAATGATGGTACA
AGTGCTTCAAGTTCTAGTAATGAAAAGGTCAAAGTTGGACTGTTGTTTCTATTGCAAAAT
CTGTGCAACAAATGGGGTCTACGTAGGTTTTTTCATCGTCCCAGGCGCATTTCAAATGGC
ACAACACCAATTTTTGTTGATGATTCTGGAAATCACTCGCCACAAGATCCACCCAATAAA
TCCTTGTCAAGTAACGAGCGTTTACAGAACAGTGATGTTCATAAGGATTTGGTCTATGAA
CGGGAATATATACAAGGAGTGCTTATTTCCGAGCATCCAAAAGGCAAACATTCAGGAATG
TTGGACAGTGGTGAAACACAGGAAAATACCTGGCAAAAACAAGAAAGAGGGCCAATGGAG
ACTATTTACAAGGGACACAGGAGCTATTTTCTAATGCTTAATTTGCAACTCGGCATCAGG
TATACCGTGGGTAAAATCACCCCTGTACCTTTGCGTGAAGTTCGTTCAAATGATTTTGGA
CCTAGGGCCCGGATAATAATGTACTTCCCTTGTGAAGGCTCGCAGTATACCCCTCCACAC
TGCTCTGTCAATTTCTTTTGGAAAGACTACTGTCCTATGGTCTTCCGGAATCTCCGGGAA
ATGTTTCATATCGATGCCGCAGATTACATGATGTCCATATGTGGGGGTGATAGTCTAAAG
GAGCTTTCTTCACCTGGGAAAAGTGGCAGTATTTTCTATCTTTCGCAGGACGAACGATTT
GTTATAAAAACATTGAGAAAGAGTGAGCTGAAGGTATGGTCCGCTAGATTGTTTATGAGT
ATGGTTTCCCTGTTTATATTTGCAACCAGGAATTCCGTTTCTTGCGCAAAAGACAATGCT
AGTAGAGTAATTCAAATATAAGTAAAAGTGAGCTTTACCCCATAAAAAAAACTGGCTCCC
TTGTTGAGTGATAAGATATGCCTACTGCAGATTGGTTTGATGTAATACGTCCTGCAGATA
CTGTTGAAGATGCTTCCAAAATATTACAATCATGTCAAAGCTTATGATAATACTCTCATT
ACGAAATTTTTTGGCGTGCACAGGATTACGCTAAAAGCTGGAAAAAAGGTCCGTTTTGTT
GTGATGGGTAATATGTTCTGCACTGAGCTGCGAATTCACCGTAAGTACGACTTAAAGGGA
TCTACACAGGGCCGGTCAACAAAAAAGCAAAAAATTAATGAGAACACAACATTGAAGGAT
CTTGACCTAGCACATGCATTTCATGTCGATAAATCATGGAGGGAAGCGCTTTTCAGGCAG
ATAGCTCTTGATAGCATGTTCCTGGAATCCCAATCGATTATTGACTATAGCATGCTATTG
GGAATCCATTTCAGAGCCCCTAATCACTTGAAGACTGCCACGTCACATCAGGATACACAC
GAAAGCAGTGGGATTACATCTGCAATGGATTGTAGCGTGCCACTGCATTGTGAGGATGCG
AATTCCTCAAAGGGATTTCTTCTAGTTGCTCACGAACCAGGTACAACAGTAGGCGGTTCC
CACATCAGAGGAAGCATGGTTAGAGCATCAGAAGGTGGTTACGAAGAAGTCGATCTTGTT
CTGCCGGGCACCGGAAGGTTCCGAGTGCAGCTAGGGGTGAACATGCCGGCCCGAGCCCGG
AAATTGCTGGAAAGCACGGACGCGGTCGAGGAGTACGACGTGGTGCTCTACCTTGGCATC
ATAGACATACTGCAGGAGTACAACGCGTCCAAGAGGGTGGAGCATGCGGTCAAATCTCTC
AAGTTCGACCCTCTCTCGATATCATCCGTTGATCCGAACTTGTATTCGAAACGATTCGTT
AGTTTCCTGGAGAGGGTTTTCCCTGAGCAAGACTAAAATTAGAGAGGCCGTGAACAGTAC
ATAGCAGTAATGGGTATTTTTGTTTTCTTGCTGTTGTTTTTGTTGTAAAGGATGAACATA
TTCACTAGAAATACTCAATAGGCAACACATGTAGTTCTTGTGCAGTTCCAAAAAACTTAC
TTATTGTACCGGTGACTATTTCCCCTTCTGTATGTCATGTACCAGAAATTGGCTATGGAA
TGCGCCACCGTGGAGCCGTACGCGTGAGCTGTGTTCGTCTCTCCGGCGAACTCCGTTGCT
TCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49510.1	793	0.0	protein\|phosphatidylinositol-4-phosphate 5-kinase, putative, expressed
Brachypodium v1_2	Bradi1g11530.1	766	0.0
Arabidopsis v10	AT1G60890.2	781	2e-136	Phosphatidylinositol-4-phosphate 5-kinase family protein \| chr1:22412452-22416498 REVERSE LENGTH=781