barSeed - Barley Seed Development Database

Probe CUST_1808_PI390587928

Source Contig U35_47281

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1808_PI390587928	Hv_44K_v2	CACTTCCACTGTATCACTGCAATCGTTTGATCTTATGATGTGTACTGAAAACAGCAGTGA	595	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.204	2.945	1.214	0.700	0.373	0.474
Raw	1140.101	1587.239	591.607	545.736	99.315	139.183

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9823.2	3119	2e-24	2930 - 2989	100	60 / 60	plus	None
JLOC1	JLOC1_6374.1	2856	8e-25	2776 - 2835	100	60 / 60	plus
Harvest21	ABC48175	658	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_47281	658	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_47281 658 Hv_44K_v2
GGGCCTGCAGGTTGGAGCGCAAGTTCTTGCAGCTGATGCTTCAAATCTAGAATCATTGAA
CAAGGTGCTGCTGTTTGCTGATCGTTTGGATTTCAAGAAGGAACGATCAAATGAACAGGT
CGCAAGATATCAGACAGTTGCTAGTAACCCCATGGGAACAGATGCTAGTAACCCCATGTC
ACCCCCACCGGTGATCAATCTTGAGAGTTTTGCTTATAAACCAGTGAAGAAGGAACCCGT
GCCACTGAGCACAAGGAGGTCCAAGCTTAGGTTACCTAGCACGAACACATCCACAAAACC
ACATCTGGTGCATAACGTGGAGGACTTGTAGGATGGATTCGGGCTTTTGACGAACCAGGA
AGAATTCGTCCCTTGAGAGTCAGCAGCGGGACGTATCATGCTGGAAGAAGATGCTAACTC
AGCTGCAGGCCAGATGAGTTGGAGGGAAATGGCAATTTTCATCGAGGTTGATACGTTTTG
TAAGTACACAGCCATATGGGCATTGGCTAACTTTCTTTTTATTTTTATTTTTTGTNGTGG
GTGTGCCATGTGNTATTGGAGTTGTAAATCTTTGGAAGGGCGACTGAACTTGGAACACTT
CCACTGTATCACTGCAATCGTTTGATCTTATGATGTGTACTGAAAACAGCAGTGATGC

Homology of Contig U35_47281 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None