barSeed - Barley Seed Development Database

Probe CUST_18085_PI390587928

Source Contig U35_27950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18085_PI390587928	Hv_44K_v2	ATGGACTACATTCAAAGGGACGAGGAGTTCATGTTCGACGCGGTGACCATCCGGCGCATG	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376589	1259	2e-24	474 - 533	100	60 / 60	plus	ABC19812
MLOC	MLOC_14666.1	1576	2e-24	1334 - 1393	100	60 / 60	minus	ABC19812
MLOC	MLOC_14666.8	464	2e-24	308 - 367	100	60 / 60	minus	None
MLOC	MLOC_14666.4	1207	2e-24	968 - 1027	100	60 / 60	minus	ABC19812
MLOC	MLOC_14666.5	1216	2e-24	977 - 1036	100	60 / 60	minus	ABC19812
MLOC	MLOC_14666.2	1472	2e-24	1230 - 1289	100	60 / 60	minus	ABC19812
MLOC	MLOC_14666.3	1163	2e-24	921 - 980	100	60 / 60	minus	ABC19812
MLOC	MLOC_14666.6	1111	2e-24	858 - 917	100	60 / 60	minus	ABC19812
JLOC1	JLOC1_10013.3	1479	8e-25	186 - 245	100	60 / 60	plus
JLOC1	JLOC1_10013.2	1170	8e-25	186 - 245	100	60 / 60	plus
JLOC1	JLOC1_10013.1	1161	8e-25	186 - 245	100	60 / 60	plus
Harvest21	ABC24361	572	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_27950	572	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_27950 572 Hv_44K_v2
CCTTATTAAAGGCCATCTTCCCAACCAGACACAGCTAGTACTAGCACACTGCGTAGCAGG
CAGCAATGGTGGCTTCCTCTCCCCCATAAAGCCACAGCCTGCGGTTCTTGGCGTGTTCTT
GCCCCTTCCTCGTACGGACGCCATGGACATGCCGGGGGAGGACGAGTACGTCTACGGCTA
CGAGTACGAGTTCGACCTCGAGAACCCCTTCACGAGCCCCGCCGACGAGCCGATCGCCAG
CCTCCTCGACGCCGAGGGCCACCACGCGCCATCCGTGTCCGCCGCCGCCTCCGCCGTCCG
CCGCGACGCTGCCCGATTCATCTCCAAGGTCCGGTACGACGGCGAGCTTGGCTTGCACCC
GCGTGTGGCCTACCTCGCGCAGAACTACGTGGATCGCTTCCTCTCCAAGGGACAATTGCC
GTTCGAGCGCAAGCCATGGGCGCCGCGGCTGCTCGCCATCAGCTGCCTCTCCATCGCCGC
CAAGATGCAGCGCGTCGACGCAATCTCCATGGACTACATTCAAAGGGACGAGGAGTTCAT
GTTCGACGCGGTGACCATCCGGCGCATGGAGC

Homology of Contig U35_27950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37010.2	318	4e-52	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi1g24990.1	259	6e-59
Arabidopsis v10	None