barSeed - Barley Seed Development Database

Probe CUST_18084_PI390587928

Source Contig U35_27951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18084_PI390587928	Hv_44K_v2	GTCAACCAAATACAGGCTATTCGGGAAAACAATACCAGATACTTGCAGCTACGTTATGCT	559	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62319.2	4308	2e-24	1098 - 1157	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.6	4397	2e-24	942 - 1001	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.7	3793	2e-24	850 - 909	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.4	4261	2e-24	1091 - 1150	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.1	2611	2e-24	1098 - 1157	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.3	2837	2e-24	1093 - 1152	100	60 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.5	4068	7e-23	2983 - 3042	98	59 / 60	plus	ABC16951 ABC44097
JLOC1	JLOC1_40777.2	4296	8e-25	3101 - 3160	100	60 / 60	plus
JLOC1	JLOC1_40777.1	4172	8e-25	2977 - 3036	100	60 / 60	plus
Harvest21	ABC21621	622	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_27951	622	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_27951 622 Hv_44K_v2
GTCACCCTTTCAAAAGCAGACTGGACAGAAACCCTTCCAAAAGCAGACTGGACAGAAATA
CGTTGCCAGTTACTCACAGTTACCACAAAGCCATGGAAGCATTGTGAATCACACACAAAC
TAATCAGCAACACTCTGCCAATCAGAATCAGTTACAGTCAAGCCGGGCAGACACAGCCAA
TGATTTACAAACTACAAAGGAATTCTTTGTGAATCACTCACTGCTGAGGCAAGCAGGCGC
TGTGAACCACATGCAGAGTAACCAGGAGAACACCGCCATTCGATTACAATTAGGTCAAGC
CAACACTGTGAAGCAAATGCAAACCATGCAGGGAAATAACACTGATCAGTCACAGCTGGT
CCAAGGTTTACCTGTTAATCAAACACAAACTATTCAGGAATACTTTGCTAAGCACCCAGT
AAATACTGTGAATCAAATGCAGATTAGCCAGGAAAACACCGCCAATCAACTACGATTCAG
TCAAGCTAACTCTGTCAGTAAGGCACAAACTATGCAGGAAAATACCACCAGTCGGTCACA
GCTGATCCAGGGTTTAACTGTCAACCAAATACAGGCTATTCGGGAAAACAATACCAGATA
CTTGCAGCTACGTTATGCTGAA

Homology of Contig U35_27951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g17857.1	1029	4e-68
Arabidopsis v10	None