barSeed - Barley Seed Development Database

Probe CUST_18062_PI390587928

Source Contig U35_15987

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18062_PI390587928	Hv_44K_v2	ACTGGAGTGCATCATTTTTTATAAAGTTCGGTAGGAGATTGCTTTGGACCCTGCAAAAAA	1375	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.561	2.104	1.164	0.856	0.383	0.413
Raw	1961.630	2463.632	1224.402	1385.027	223.304	259.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364118	1431	3e-21	1378 - 1431	100	54 / 54	plus	ABC05936
Harvest21	ABC05936	1372	5e-23	1279 - 1334	100	56 / 56	plus	ABC05936
Harvest35	U35_15987	1469	3e-25	1376 - 1435	100	60 / 60	plus

Contig Sequence (1469 bp)

>U35_15987 1469 Hv_44K_v2
GCGCTGCAGCGTCACCGTCGGTGCTCCACCACCCTCCTCCTCACCCAGGATCACCCGGCC
GCGGGGGACAGAGAATATTATCATCCCGCCTCCCTATTATAATCCCGGCCCCTTCCCGTC
TCCATCTCGATCTCGCCACCACTCCCCCGTTCCCACTCCCCTCCCGGATCTCCCCATTCC
GCCATGGCGATCTCCACCAACGGCTCCTCGCCGCCGGCGCTCAAGTTCCTCATCTACGGC
CGCACCGGCTGGATCGGGGGTCTCCTCGGCAAGCTCTGCACCGCGCAGGGCATCCCCTTC
GCCTACGGCGCCGGCCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTC
GCGCCCACGCACGTCTTCAACGCCGCGGGCGTCACCGGCCGCCCCAACGTCGACTGGTGC
GAGACCCACCGCGTCGAGACCATCCGCGCCAACGTCTGCGGCACGCTCACGCTCGCCGAC
GTCTGCCGCGCCCGGGGCCTCGTGCTCATCAACTACGCCACGGGCTGCATCTTCGAGTAC
GACGCGGCCCACCCGCTCGGCTCGGGGGTCGGGTTCAAGGAGGAGGACACCCCTAACTTC
GTTGGATCCTTCTACTCCAAAACAAAGGCCATGGTTGAGGAACTGCTGAAGAATTACGAA
AACGTGTGCACCCTTCGTGTAAGGATGCCTATTTCATCTGATTTGTCCAATCCTCGCAAT
TTCATCACAAAGATCACCCGGTATGATAAGGTTGTGGATATCCCAAATTCAATGACAATA
TTGGATGAACTTCTTCCCATCTCAATTGAGATGGCGAAGAGAAACCTCACCGGAATCTGG
AACTTCACTAATCCTGGTGTGGTGAGCCACAATGAGATACTGGAGATGTACAGGGATTAC
ATCGATCCAAACTTCTCCTGGAAGAACTTCAACTTGGAGGAGCAAGCCAAGGTCATAGTA
GCACCGAGGAGCAACAATGAACTTGACACTGTTAAATTGAAAACGGAGTTCCCAGAACTT
CTGTCAATCAAGGAGTCGCTGATCAAAAACGTTTTCAAACCAAATCAGAAGACATCCAAG
GCTTGACCAAATGGAGCAGTGTGCACAGAGCCTTATGTTGATGTTACTTGTTCGACATAC
ATTTACATCGCTCTCCGGTGCTAATCCAATAAGCATGCGTAGTGTTTTATTCCGTCCCGG
TCGTGTGCACGCATTGTTGTTGCAGGAGATAGTTTCTTATAGGAAGTCACCATCCCTTGT
CATTACCAGATTATTACACAGAACACCACATGGTGTTGCTATTGTATCCTATGAATACGG
TGGGAAATGGACCGAGTGAGGAACAAGGTCCTCTGTTGTATTGTACTATCACATAACTGG
AGTGCATCATTTTTTATAAAGTTCGGTAGGAGATTGCTTTGGACCCTGCAAAAAAAAAAA
AAAAAAAGGTTCGTTCATATAAAAAAAAA

Homology of Contig U35_15987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g45540.1	312	protein\|synthase, putative, expressed
Brachypodium v1_2	Bradi3g51680.1	301
Arabidopsis v10	AT1G63000.1	301	\| Symbols: NRS/ER, UER1 \| nucleotide-rhamnose synthase/epimerase-reductase \| chr1:23342510-23343859 FORWARD LENGTH=301