barSeed - Barley Seed Development Database

Probe CUST_18060_PI390587928

Source Contig U35_15989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18060_PI390587928	Hv_44K_v2	GTTAGCATGCGGAAACATAATGTATGGAATAAATCATCTTATTGAGCATGTTCTTGCAGT	1463	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.631	3.364	1.247	0.766	0.264	0.310
Raw	795.121	1541.892	502.541	501.481	57.338	75.424

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62759.4	1802	2e-24	1668 - 1727	100	60 / 60	plus	ABC08966
MLOC	MLOC_62759.3	1722	2e-24	1590 - 1649	100	60 / 60	plus	ABC08966
MLOC	AK250358.1	1539	7e-23	1483 - 1539	100	57 / 57	plus	ABC08966
JLOC1	JLOC1_41095.1	1820	8e-25	1686 - 1745	100	60 / 60	plus
Harvest21	ABC08966	1541	3e-25	1464 - 1523	100	60 / 60	plus	ABC08966
Harvest35	U35_15989	1541	3e-25	1464 - 1523	100	60 / 60	plus

Contig Sequence (1541 bp)

>U35_15989 1541 Hv_44K_v2
AATTAATCGAACCCATCCCAGCGAAGAAGAGGAGGAGGAAGAAGAAGCCTCTCCTTCTCC
TTTAAGCTTCGAATCATCCTTCCCCTTCCCTCCCACTTCATCTCGCCGCGACGAAGCTTC
CAAAACCCCCCAAAAGGATCCCCCAATCTTCGCCTCTGCCTCCGGCCCGATCAATCTCTC
AGCAGCGGATAGCGCTCGGCTAGGCCCCGGGATCCATGGAGAGGTACGAGCTGCTCAAGG
ACATCGGCGCCGGCAACTTCGGCGTCGCCCGGCTGATGCGTAACAAGGAGACCAAGGAGC
TCGTCGCCATGAAGTACATCCCACGAGGCCTCAAGATTGATGAGAATGTGGCGAGGGAGA
TCATAAACCACCGGTCGCTGCGGCACCCCAACATAATCCGATTCAAGGAGGTGGTGGTCA
CGCCGACGCACCTGGCGATTGTGATGGAGTACGCGGCCGGCGGCGAGCTCTTCGACCGGA
TCTGCAACGCCGGGAGGTTCAGCGAGGACGAGGCCAGGTACTTCTTCCAGCAGCTCATCT
GCGGCGTGAGCTACTGCCACTTCATGCAAATTTGCCACCGGGACCTGAAGCTGGAGAACA
CTCTGCTGGACGGCAGCCCGGCGCCCCGCCTCAAGATCTGCGACTTCGGTTACTCAAAGT
CGTCGCTGCTGCACTCGAAGCCCAAGTCGACGGTCGGCACGCCGGCGTACATCGCCCCGG
AGGTGCTCTCCCGCCGGGAATACGACGGCAAGACAGCCGATGTGTGGTCTTGTGGAGTGA
CCCTTTATGTGATGCTAGTCGGCGGTTACCCTTTTGAGGATCCTGATGACCCCAAGAATT
TCAGAAAGACCATCGGGAGAATAATGTCAATCCAATACAAAATACCGGAGTACGTCCACG
TATCCCAAGACTGCAAGCAACTCCTTGCCAGTATTTTTGTTGCAAACCCTGCAAAGAGAA
TAACAATGAGGGAGATCAGGAACCACCCCTGGTTCTTGAAGAACTTACCAAGGGAGCTCA
CGGAAGCTGCCCAAGCAATGTACTACAAGAGAGACAACAGCGCCCCAACCTACTCGGTCC
AGTCCGTGGAGGAGATCATGAAGATTGTCGAGGAGGCGCAGAAACCGCCTCCTTCCACCA
CTCCGGTAGCAGGTTTCGGGTGGGCGGAGGAGGACGAGCAGGAGGATGGCAAGAAGCCGG
AGGAAGAGGCGGAGGAGGACGATGAGGAAGACGAGTATGAGAAGCAGTTGAATGAGGTCC
GTGCCAGCGGTGAGTTCCACATCAGCTAGCTGATGGGGGTGCTTCACTGGCGTGAGAAGG
CCACAGACCGGGGATAAAATTTGTCATATAGTTTGTAGTTTGTGGTTTTGTTCTCGAGTT
TTTCTCTTCATTCTTGTCTCTGATTCTGCAACAGTGTAAATTACCAAAGTGGTTCCGTCG
CCGTCTTTACAATGACTGATTAAGTTAGCATGCGGAAACATAATGTATGGAATAAATCAT
CTTATTGAGCATGTTCTTGCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g35240.1	360	0.0	protein\|CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi5g10300.1	358	0.0
Arabidopsis v10	AT5G63650.1	360	3e-180	\| Symbols: SNRK2-5, SNRK2.5, SRK2H \| SNF1-related protein kinase 2.5 \| chr5:25481631-25483495 REVERSE LENGTH=360