- Probe CUST_1805_PI390587928
- Source Contig U35_47284
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1805_PI390587928 | Hv_44K_v2 | ATACTGATCCTTACACGAAGCTCCTTCACTTATGCAGCCAAACTGCTTCATTTGGTGCTA | 490 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.028 | 1.152 | 2.055 | 1.799 | 0.412 | 0.459 |
| Raw | 32.542 | 56.668 | 87.720 | 122.852 | 9.818 | 11.814 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70022.3 | 4911 | 2e-24 | 2547 - 2606 | 100 | 60 / 60 | minus | ABC09357 |
| MLOC | MLOC_70022.2 | 5501 | 2e-24 | 2608 - 2667 | 100 | 60 / 60 | minus | ABC09357 |
| MLOC | MLOC_70022.1 | 4117 | 2e-24 | 2209 - 2268 | 100 | 60 / 60 | minus | ABC09357 |
| JLOC1 | JLOC1_46435.3 | 5425 | 8e-25 | 2832 - 2891 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46435.2 | 4602 | 8e-25 | 2009 - 2068 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46435.1 | 4125 | 8e-25 | 1532 - 1591 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46434.1 | 2475 | 8e-25 | 2248 - 2307 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC48179 | 644 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47284 | 644 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus |
Contig Sequence (644 bp)
>U35_47284 644 Hv_44K_v2 GATACTTTCTAAGTGTACATTGAGCAGTGCCTACGTTTTAAATCTCTAGACCTCACTCCG GTGTCGACTTATTTGAGTTTGGCTACCATAGTGCTCTTCAGGATGTTGATCAAACAGACA TGAGCTGCTCTGAGTCGACAATTGTCAACCAGTCACTGGACCATCTGCTGAGATGCTATG ACAGATTTGTAAACGGACCTGTTACTGTTTCCACCAACTCAACTTCAACATTGAACAAGA ATAAGGAATCTGCAGAACATAAACATCAGCAGCATTTCACCCCTGAAGGAAATTCAGTGG AATGCACAATGAATGTGATTATGCTTGGCACTTCAATTCTTAAGTTCATTGTCGATACGA CAACCATCAAGCTGGTCAATGAGAGTAAAGTAAGATGTGTTGGATTTGCATCATCTTACA CAAAATATGCAGTGTCAGCCATGAAAAGGCACAGTGAGGGATCATCTTTAATGGGGATGA TCTGAAAGACATACTGATCCTTACACGAAGCTCCTTCACTTATGCAGCCAAACTGCTTCA TTTGGTGCTAGCAAGCTCAACCGAGTCATCAAGCCCCCCAGAGGAGGCCTTCCTCCTTGC CAATAATCTTCTTGATCTTGTACCTGCTGTCGAATCCTTTGCAG
Homology of Contig U35_47284 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g42040.1 | 1183 | 6e-52 | protein|HEAT repeat family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g14620.1 | 1193 | 7e-67 | |
| Arabidopsis v10 | None |