barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_1803_PI390587928Hv_44K_v2TCCTAGAAAAGTGGCGAAGACAGTCATAAATTACTCCTCACCTGAGAATTCAGGAGAGGA607GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75798.417982e-24928 - 98710060 / 60minus None
MLOCMLOC_75798.124202e-241542 - 160110060 / 60minus None
MLOCMLOC_75798.225302e-241652 - 171110060 / 60minus None
MLOCMLOC_68151.320312e-24503 - 56210060 / 60plus None
MLOCMLOC_68151.130332e-241506 - 156510060 / 60plus None
MLOCMLOC_68151.220062e-24673 - 73210060 / 60plus None
MLOCMLOC_75798.324233e-211548 - 160110054 / 54minus None
JLOC1JLOC1_50557.219228e-25406 - 46510060 / 60plus
JLOC1JLOC1_50557.119258e-25406 - 46510060 / 60plus
Harvest21ABC481866703e-25608 - 66710060 / 60plus
Harvest35U35_472876703e-25608 - 66710060 / 60plus



Contig Sequence (670 bp)

>U35_47287 670 Hv_44K_v2
GGCTGCAGGCTGGAACGCCGGATCCCTCTGCCTCTAGCGCCGAGCAATCTCGGACAGACA
TCGTTCCAATCCAGTTACAGGGCTGGACTAGCAGCATCCCGGATGGAGAAACCTTGTGAC
TCTTGCAAGAGATATGCAGACCATTTGGATGAAAAGATGAAGTGTTTCCGCGGGCACATG
GGTGCTGATTTTAGACATGGCATGGCAAGCCTATCATACCAAAGAAGTTCATAGATAATT
TCGGAGGAAAGATCTCAAGAACCATCGAACTAGAATCTTCTAATGGTAATATGTATGCCT
TTGAAGTTTCCAAGCGTATGGGTAATATAGTCCTCCGGCGTCGATGGCAGGCATTTATAG
ATGAACATCACATAGAAGAGAATGATTCTTTGCTGTTTCGTCACATTGAGAAACCCCGTT
TTGAGGTTCTCGTCCTTGATTCTGATGATTGCGAAAAGGTGTTCTTCTGCCCTGGCATCA
ACATTGCTAGTAATGCTGAAGAAAGAGGTGTGGATTCTGTTGATATTTCAAATGGCTCCC
GTGATAATGCCACAAGATCACCAGGAAGCAAAAGGTTTGCTACGTGCGGAAGGGGTAACT
CAAGCCATCCTAGAAAAGTGGCGAAGACAGTCATAAATTACTCCTCACCTGAGAATTCAG
GAGAGGACAC



Homology of Contig U35_47287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g14530.15697e-60
Arabidopsis v10None