barSeed - Barley Seed Development Database

Probe CUST_1802_PI390587928

Source Contig U35_47289

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1802_PI390587928	Hv_44K_v2	GCCTGTTAACTGAGGAGGAATTTCATGGTAACGGGTGGATGATCATGCTTGACATGAAGA	589	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.166	2.674	1.385	0.497	0.189	0.186
Raw	152.866	204.849	90.383	52.071	6.289	7.208

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31922.1	1377	2e-24	1205 - 1264	100	60 / 60	plus	None
JLOC1	JLOC1_20906.1	1261	8e-25	1119 - 1178	100	60 / 60	plus
Harvest21	ABC48188	652	3e-25	590 - 649	100	60 / 60	plus
Harvest35	U35_47289	652	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_47289 652 Hv_44K_v2
GGCTAATGTCTATACAAAAAAAAGGGCATGCGTGCCGAAATCTGCGTCTTCAACTCAGAG
ACTGAAAAGTGGAAAATCATCAGCAAAATCGACCTGGGCCAGTTCCCCGAACTCTGGTCA
ACCCACTATGTGCTCGCTTTCGACGGCCGTTTCCTGTGCTGGGTAGACTACTTCAGCGGT
GTCCTGCTATGTGACTTCTCCAAAAATATAGACTCCCCGTCGCTCTGCTACGTGCCTTTC
CCTGGAGGAAAAGAGTACCCTGATAAGGTTCGGGTTGATAGGTACTTCCCAGAGAGATTC
CAAAGTGTGTCCATCAGCCAAGGCAAGATCTACTTTGTCCGCATTGATAATGACTTCCAT
GACAGAATCCATGGTCGCTGCCGCAGATGTCCTGAGCTTCATGATAGAAAAAGGCAAACT
ACCCAGAATATCACCATTTGGACTTTGAACTCAGAGTTAGATTGGAAGCTGCACCGCATA
ATCAACCTAGATTCTCTATGGGTGCAAGCTGGTTACCGAGATCTGCAAATACATCAGCGT
CTTCCTGAGTTCCCAACCATCAGCGCGGACGACCCTGATGTTCTGTGTTGCCTGTTAACT
GAGGAGGAATTTCATGGTAACGGGTGGATGATCATGCTTGACATGAAGAATG

Homology of Contig U35_47289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None