barSeed - Barley Seed Development Database

Probe CUST_18025_PI390587928

Source Contig U35_12008

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18025_PI390587928	Hv_44K_v2	AACAAAGTAGAACTGTAAAGGGCATCGAGCAGGATATAGGATGCAGGTTCACAGAGCTTC	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358267	2147	2e-24	1317 - 1376	100	60 / 60	plus	ABC31708
MLOC	MLOC_52016.3	2092	2e-24	1321 - 1380	100	60 / 60	plus	ABC31708
MLOC	MLOC_52016.1	2265	2e-24	1454 - 1513	100	60 / 60	plus	ABC31708
MLOC	MLOC_52016.2	2471	2e-24	1662 - 1721	100	60 / 60	plus	ABC31708
JLOC1	JLOC1_33270.3	2105	8e-25	1227 - 1286	100	60 / 60	plus
JLOC1	JLOC1_33270.2	1811	8e-25	933 - 992	100	60 / 60	plus
JLOC1	JLOC1_33270.1	1997	8e-25	1119 - 1178	100	60 / 60	plus
Harvest21	ABC25157	791	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_12008	792	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (792 bp)

>U35_12008 792 Hv_44K_v2
CGAGAACTCGCTCGACAAGTTGAGAAGGAATTTAGAGAATCTGCTCCATTAGACACTCTT
TGTGTCTATGGAGGTGTTCCCATCAGTCAGCAAATGAGAACTCTTAATTATGGTGTTGAC
GTTGTGGTTGGAACTCCAGGGCGTGTTATTGATCTTTTGAGAAGAGGTGTTCTAAACTTA
TCAGAGATCCAATTTATGGTTCTGGATGAAGCTGATCAGATGCTGGCTGTGGGTTTTGAT
GAAGCTGTTGAGGTTGGTGACTCAGAACAGAAATTACCTGAAGGAATCTCTCTTTATTCA
ATTGTATCTGAGAACTATGGGAAGTCCTCCATTCTTGGTCCATTGATTAAAGAGCATGCT
GATGGTGGGAAGTGCATTGTATTTACTCAAACTAAACGAGAAGCAGATAGATTGGCATAT
GCCATGGGCAGGAGTTATGCATGTCAGGCGCTGCATGGAGATATCTCACAAAATCAGAGA
GAAAGGACACTCTCAGGATTTCGAGATGGCCGCTTTAACATCCTTGTAGCAACTGATGTT
GCAGCCCGTGGATTAGACATACCCAATGTTGATCTAGTGGTACATTATGAAATCCCAAAC
TCGTCAGAGTTATTTGTTCACAGATCTGGGCGAACTGCACGAGCAGGGAAGAAAGGCATT
GCCATTCTAATGTACACATATGAACAAAGTAGAACTGTAAAGGGCATCGAGCAGGATATA
GGATGCAGGTTCACAGAGCTTCCCAAGGTTGCAGCTACAGACGAAGCTGCGGAGCTGTTT
AACGTTATGAGA

Homology of Contig U35_12008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05050.1	603	1e-154	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g58250.1	605	1e-159
Arabidopsis v10	AT3G22330.1	616	6e-128	\| Symbols: PMH2, ATRH53 \| putative mitochondrial RNA helicase 2 \| chr3:7892641-7895145 FORWARD LENGTH=616