barSeed - Barley Seed Development Database

Probe CUST_18021_PI390587928

Source Contig U35_27975

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18021_PI390587928	Hv_44K_v2	ATACCCGATTCATTGGGGAACCTATTGAAGCTACGATTCCTGCGTCTTAACAACAACAGT	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374641	2244	2e-24	488 - 547	100	60 / 60	plus	None
Harvest21	ABC21818	613	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_27975	613	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_27975 613 Hv_44K_v2
GCTCGAAAAGAACTGGGCCGAACGAGGGGATCGAAGCGGACGGGAGGGGGGGGCCAAAAG
CTGCGGAACGAATCTTCGCTTCTATCGCAGAAAAGCTGCGTCTGCGCCTCTGCGGGGCGT
GGAATGCGCGGCGGCGGCTGCTGCTGTGGGATCTAGGGCGGCGGCAATGGGGGTGCCGCC
GTGGGCGATCTGGGCGCTGCTGCTGCTCCACCCTGCCGCGCGCGTGCTTGCAAACACGGA
AGGTGATGCATTGCATAGCCTAAGAACTAACTTAAATGATCCCAATAATGTGCTACAAAG
TTGGGATCCAACTCTGGTCAATCCGTGCACTTGGTTTCATGTTACTTGCAACAACGACAA
CAGCGTTATCAGAGTTGATCTTGGAAATGCTGCATTATTTGGTACTTTGGTGCCACAGCT
TGGTCAGCTAAGAAACTTGCAATACCTGGAGCTCTACAGTAATAACATCAGTGGCACAAT
ACCTAGCGAACTTGGAAACCTCACAAATTTGGTCAGTTTGGATTTGTACTTAAACAACTT
CACTGGTCCAATACCCGATTCATTGGGGAACCTATTGAAGCTACGATTCCTGCGTCTTAA
CAACAACAGTCTT

Homology of Contig U35_27975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07760.1	625	3e-76	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi5g12227.1	631	1e-60
Arabidopsis v10	AT1G34210.1	628	3e-62	\| Symbols: SERK2, ATSERK2 \| somatic embryogenesis receptor-like kinase 2 \| chr1:12459078-12462752 FORWARD LENGTH=628