barSeed - Barley Seed Development Database

Probe CUST_18016_PI390587928

Source Contig U35_39952

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18016_PI390587928	Hv_44K_v2	TTGCTGAGATCAAAGGAGGAGGGTTGCTGAAGAAATTTAGCATGAAAAGAACTCGTTATG	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13441.3	4527	2e-24	2580 - 2639	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
MLOC	MLOC_13441.1	3238	2e-24	1595 - 1654	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
MLOC	MLOC_13441.2	3308	2e-24	1607 - 1666	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
JLOC1	JLOC1_9100.9	3309	8e-25	1220 - 1279	100	60 / 60	plus
JLOC1	JLOC1_9100.8	3516	8e-25	1427 - 1486	100	60 / 60	plus
JLOC1	JLOC1_9100.7	3524	8e-25	1435 - 1494	100	60 / 60	plus
JLOC1	JLOC1_9100.6	3541	8e-25	1452 - 1511	100	60 / 60	plus
JLOC1	JLOC1_9100.5	3409	8e-25	1320 - 1379	100	60 / 60	plus
JLOC1	JLOC1_9100.4	3634	8e-25	1545 - 1604	100	60 / 60	plus
JLOC1	JLOC1_9100.3	3501	8e-25	1412 - 1471	100	60 / 60	plus
JLOC1	JLOC1_9100.2	3738	8e-25	1649 - 1708	100	60 / 60	plus
JLOC1	JLOC1_9100.1	3656	8e-25	1713 - 1772	100	60 / 60	plus
Harvest21	ABC36215	590	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_39952	590	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_39952 590 Hv_44K_v2
GAGACTCGCCGAAACAGAAAGTGCGGGGGGTTATACCGAAACTGACGTAATTACAGCAGA
GCAGATGAGGTGAAGTGACCATGATTGATTATTTTAACAGGCAGAAAATGCTTTGAGTGA
ACTGCATCACGATATGCCTAAGGATTCAGGAGAGACGAGCTCTGAAAATTTCTCATTTCC
CTGTTCATCAAACTTATTCTTGGATCAAATGCAGCCAGCACAAATTTCCGAGGTGCTACT
CCCTGCTTTGACAAAGATTGATTCCATTTTAGGTGATGAAGCCGCCATGGTTATCATAGC
TGACCTCTCTAAAAGGGCTACCAATCTCAAGAAACTGCCAGGGCAGCTCGAGGAAATAGG
GAACCAACTGCCAGTGATAGCCATTGTTATAAGACAAATGGGCACAGTGCACCTCACTGA
TGGAATTGCCAAGAGTTGGATTGGGGAGGTCCGCAAATTGGCTCATCGTGTTGAGGATGT
AATGGATAAATGCTCATACCATGTTGCTGAGATCAAAGGAGGAGGGTTGCTGAAGAAATT
TAGCATGAAAAGAACTCGTTATGTAAAAAAATTCACTGAAATTATGGATG

Homology of Contig U35_39952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None