- Probe CUST_18014_PI390587928
- Source Contig U35_39954
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18014_PI390587928 | Hv_44K_v2 | AAGGTGGTGGTCAGATAGAATGAAGCTCAACGACAACCTTAATGAGATACTGGAAAACAT | 531 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.090 | 1.861 | 1.170 | 0.703 | 0.618 | 0.601 |
| Raw | 75.990 | 89.017 | 57.952 | 48.925 | 16.593 | 17.458 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54603.3 | 4822 | 2e-24 | 3000 - 3059 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54603.2 | 5157 | 2e-24 | 3318 - 3377 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54603.4 | 4743 | 2e-24 | 3013 - 3072 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54603.1 | 4915 | 2e-24 | 3076 - 3135 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_35154.2 | 3857 | 8e-25 | 1976 - 2035 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35154.1 | 4862 | 8e-25 | 2981 - 3040 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36216 | 594 | 3e-25 | 532 - 591 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39954 | 594 | 3e-25 | 532 - 591 | 100 | 60 / 60 | plus |
Contig Sequence (594 bp)
>U35_39954 594 Hv_44K_v2 GGTTGGAACTTATCTCAGTTGCCATTACCTTGCAAGCTTACAGGCATTGCTCAGAAAAGC AGACTCGAAGTGTTTTGTTGGAGATTTCGCAAACAAGATAGATGGGATTCCAAAGTTACC AAGATTTTCATCGGCAGACATGGAACATCTCGAAAAGCATGTATCAGAATTCTTCAATCA ACTTCCTGACGTACCAATTGTGTGCATTAGTATGCTTGGAGGTGATTTTGTGAATGTTCT TGGGGAAGCACTTCTTCTCCCTTCCCTGTTTCCTGCTTGGATGTTGCTCTCAAGGTTTGA TTCAACAAACAAGCCTACCACAATGCTTCTACCAGTGGATTCTATTTCGAAAGAAGCACA TAATGAAGACTCGTCTATCAAAGAACTGGATAATCCAACTAGAGCATCAGATATGAAATG GAAGTGCCCTTGGAGCTTCACTATTACAGATTATGTGGCTCCAACTTTCAGAAAACTATG TGAGGATAACTTTAGATCCCTCTCTCATGTAACCGGCATTCCAAATGGAGTAAGGTGGTG GTCAGATAGAATGAAGCTCAACGACAACCTTAATGAGATACTGGAAAACATGGA
Homology of Contig U35_39954 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g53120.1 | 976 | 2e-82 | protein|Peptidase family C50, putative, expressed |
| Brachypodium v1_2 | Bradi3g57690.1 | 1001 | 3e-86 | |
| Arabidopsis v10 | None |