barSeed - Barley Seed Development Database

Probe CUST_18010_PI390587928

Source Contig U35_39958

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18010_PI390587928	Hv_44K_v2	CATATGCCTTATTACTGAAAAGAGTTAGAGAAACAGGACTGTGCATATGCCTTGAGTCAT	428	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70143.4	2486	2e-24	2060 - 2119	100	60 / 60	plus	None
MLOC	MLOC_70143.6	2326	2e-24	353 - 412	100	60 / 60	minus	None
MLOC	MLOC_70143.1	5565	2e-24	3592 - 3651	100	60 / 60	minus	ABC20753
MLOC	MLOC_70143.2	3377	2e-24	1408 - 1467	100	60 / 60	minus	None
MLOC	MLOC_70143.3	3129	2e-24	1261 - 1320	100	60 / 60	minus	None
JLOC1	JLOC1_46534.2	3038	8e-25	1809 - 1868	100	60 / 60	plus
JLOC1	JLOC1_46534.1	3956	8e-25	1809 - 1868	100	60 / 60	plus
Harvest21	ABC36223	491	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_39958	491	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_39958 491 Hv_44K_v2
GAAGGATTGCAACTCAGAAGAAGCCCTGGAGCTATTGCATGGTTTGGTCAGTAAGGGAGT
ATCCCTAGACACAATAACCTACTCTTCGGTCGTTGATGTCCTCTCAAGAGAAGACAGAAC
CGAAGAAGCCATTCAGATGTTGCATGCTGTGCAAGATATGGGGATGAGACCAAAAGTTGG
GATGTATAACAAGATACTGTTCGCCCTCTGTAAAAGATGTGAAACAGATCAGGCTATTGA
TTTTTTTGCTTATATGGTGTCTAACGGTTGCATGCCTAACGAGTCAACCTACATTATACT
CATTGAAGGCCTTGCCCATGAGGGTCTGTTGAAGGAAGCACGATATGTACTGAGTGAGTT
GTACGCAAAAGGGGTCTTGAGCAAGAGTTTACTTGAAGACCAGCAGTAAGGTTGTGGTTT
ACATTGTGCATATGCCTTATTACTGAAAAGAGTTAGAGAAACAGGACTGTGCATATGCCT
TGAGTCATCAG

Homology of Contig U35_39958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57410.2	685	1e-60	protein\|pentatricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g51860.1	666	5e-73
Arabidopsis v10	None