barSeed - Barley Seed Development Database

Probe CUST_18009_PI390587928

Source Contig U35_39959

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18009_PI390587928	Hv_44K_v2	GGTGACCTGAGTGCATTGAAGGACTAAACTATCGTATATATCCTACAAGATTTGGTTCAA	15	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70143.1	5565	6e-24	2837 - 2895	100	59 / 59	minus	ABC20753
MLOC	MLOC_70143.2	3377	6e-24	525 - 583	100	59 / 59	minus	None
MLOC	MLOC_70143.3	3129	6e-24	506 - 564	100	59 / 59	minus	None
MLOC	MLOC_70142.2	3564	6e-24	3286 - 3344	100	59 / 59	minus	ABC20753
JLOC1	JLOC1_46534.1	3956	3e-24	2565 - 2623	100	59 / 59	plus
JLOC1	JLOC1_46533.2	3431	3e-24	3162 - 3220	100	59 / 59	minus
JLOC1	JLOC1_46533.1	3663	3e-24	3394 - 3452	100	59 / 59	minus
Harvest35	U35_39959	704	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (704 bp)

>U35_39959 704 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACCAAATCTTGTAGGATATATACGATAGTTTAGTCCTTCAA
TGCACTCAGGTCACCGTAGACAGTAGAGCAGTATAGGTATAACTGGAAAGTGATGAACCG
TCATATGACTTACGAGCCATCGAACTGCGGTTCTAACTTCGAAGCCAAAAAAATAACATG
AGGTTCATTCTGAACCTTTGCCCTTTGCTGCAGACAACGAAGGGTGTAGGACTGTAGGTG
TAGGAACAACAGCCAACCTGCGAATGGTATCTGACGTCATGCCCTGTGGTTTCACCAATA
TGAAATTCCTTAATGATGAAATTGGAACGTGTGGATAGCCTGTTTATAGATTAAAAATAG
ATCCAGCTGACGTTATATTTTCCTCACTTGCAGCGTTCTCTCGACATGCGAATATTCAGT
CAGGCAAACCATTGCTCATGGAAGATAAATCAAAATGTTTATAAACACGGAGAAGTATAG
TCAAATAATTCAACAATTTAGTCTCAAACTGCTGAAACTGAGAAGTGTTTCTAAGAAACT
TTATTTGGCCTGTATCTTTTATTCGGCCGATATGAGTATGAACATTCTTTTATCTCATTT
GCTTGTGTTATCCTCCAGCCCGTCCTTTTGATTTCCTTGGTCTTCACGCTTCAAAGACCT
ATCCCATCTTTATGGATCATTGTAGCTTGAAATCACACACATTC

Homology of Contig U35_39959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None